BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0076.p (233 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313679|ref|YP_003777771.1| transmembrane sensor histidine ... 407 e-115 gi|300309980|ref|YP_003774072.1| two component transmembrane sen... 80 1e-16 gi|300314014|ref|YP_003778106.1| two component sensor histidine ... 61 1e-10 gi|300311751|ref|YP_003775843.1| signal transduction histidine k... 58 6e-10 gi|300312679|ref|YP_003776771.1| periplasmic sensor signal trans... 58 7e-10 >gi|300313679|ref|YP_003777771.1| transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 444 Score = 407 bits (1047), Expect = e-115, Method: Compositional matrix adjust. Identities = 222/227 (97%), Positives = 225/227 (99%) Query: 1 MKSIRNKLLLWLGLGLFSIIVLAGVALYFQARGEANQIFDYQMRQIAASLPRQAFSPISP 60 M S+RNKLLLWLGLGLFSIIVLAGVALYFQARGEANQIFDYQMRQIAASLPRQAFSPISP Sbjct: 1 MNSVRNKLLLWLGLGLFSIIVLAGVALYFQARGEANQIFDYQMRQIAASLPRQAFSPISP 60 Query: 61 GQQFPELEDEIMMQIWDSRGSVIYHSHARGAMPRQAELGFANVRGPNGMWRVYSAQIGST 120 GQQFPELEDEIMMQIWDSRG+VIYHSHARGAMPRQAELGFANV GPNGMWRVYSAQIGST Sbjct: 61 GQQFPELEDEIMMQIWDSRGAVIYHSHARGAMPRQAELGFANVSGPNGMWRVYSAQIGST 120 Query: 121 VVQVAQPQSARDEIAAQMAVKTVVPLLLLFPLIGVLSWVAVSRGLAPVRKAAAEVAARDM 180 VVQVAQPQSARDEIAAQMAVKTVVPLLLLFPLIGVLSWVAVSRGLAPVRKAAAEVAARDM Sbjct: 121 VVQVAQPQSARDEIAAQMAVKTVVPLLLLFPLIGVLSWVAVSRGLAPVRKAAAEVAARDM 180 Query: 181 NSLQPLSDVGMPQEIQPLTHALNDLLARLKHATETQRAFVADAAHEL 227 NSLQPL+DVGMPQEIQPLTHALNDLLARLKHATETQRAFVADAAHEL Sbjct: 181 NSLQPLADVGMPQEIQPLTHALNDLLARLKHATETQRAFVADAAHEL 227 >gi|300309980|ref|YP_003774072.1| two component transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 390 Score = 80.1 bits (196), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 50/165 (30%), Positives = 84/165 (50%), Gaps = 7/165 (4%) Query: 63 QFPELEDEIMMQIWDSRGSVIYHSHARGAMPRQAELGFANVRGPNGMWRVYSAQIGSTVV 122 Q P ED + R +++ S R A + A R + R+ + Q+G T+ Sbjct: 3 QPPPDEDRSTVGTVQFRNDILHGSDVRIATLQVDLRRSAAQRAASREPRLATVQVGETLE 62 Query: 123 QVAQPQSARDEIAAQMAVKTVVPLLLLFPLIGVLSWVAVSRGLAPVRKAAAEVAARDMNS 182 + AQ +A ++ ++P ++ P+ L W A+SRGL+P+ + + AR + Sbjct: 63 KRAQ-------LANEIIKGVILPQFIILPVALALVWFALSRGLSPLSELQQRIRARRPDD 115 Query: 183 LQPLSDVGMPQEIQPLTHALNDLLARLKHATETQRAFVADAAHEL 227 L P+ +P+EI PL +LND+LARL Q+ F+ADAAH++ Sbjct: 116 LSPIDSGQVPEEISPLVRSLNDMLARLSQTIAIQKRFIADAAHQM 160 >gi|300314014|ref|YP_003778106.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 467 Score = 60.8 bits (146), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 36/110 (32%), Positives = 62/110 (56%) Query: 118 GSTVVQVAQPQSARDEIAAQMAVKTVVPLLLLFPLIGVLSWVAVSRGLAPVRKAAAEVAA 177 G+ +VQVA+ R +A ++ +T++ L +I ++ V R L PV ++ Sbjct: 151 GAALVQVAETMENRSALARKIFWETLIRQAALLVVIVSVTLYVVRRALQPVDALRRQLDE 210 Query: 178 RDMNSLQPLSDVGMPQEIQPLTHALNDLLARLKHATETQRAFVADAAHEL 227 R + L P++ P+E+QP ALN L+ARL+ + Q+ FVA+A+H+L Sbjct: 211 RPADDLSPVAPPMAPRELQPFIDALNQLMARLRRLLDHQQRFVANASHQL 260 >gi|300311751|ref|YP_003775843.1| signal transduction histidine kinase [Herbaspirillum seropedicae SmR1] Length = 446 Score = 58.2 bits (139), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 3/139 (2%) Query: 92 MPRQAEL--GFANVRGPNGMWRVY-SAQIGSTVVQVAQPQSARDEIAAQMAVKTVVPLLL 148 +P A+L GF + + +RVY A + +AQ R IA + A + + P ++ Sbjct: 101 LPLPADLAEGFHTLLLHHEYFRVYVQALPNGKRLALAQETDLRQHIAQRSAWRALWPFVV 160 Query: 149 LFPLIGVLSWVAVSRGLAPVRKAAAEVAARDMNSLQPLSDVGMPQEIQPLTHALNDLLAR 208 L PL+ + + R AP++ E+ +R + LQP+++ +P+E+Q A+N LLAR Sbjct: 161 LAPLLLLAVQRIIKRLFAPLQALRQEIDSRGEDDLQPIAERLLPREVQAFVAAINGLLAR 220 Query: 209 LKHATETQRAFVADAAHEL 227 ++ QR FVADAAHEL Sbjct: 221 VEAGMAAQRRFVADAAHEL 239 >gi|300312679|ref|YP_003776771.1| periplasmic sensor signal transduction histidine kinase [Herbaspirillum seropedicae SmR1] Length = 459 Score = 57.8 bits (138), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 61/247 (24%), Positives = 98/247 (39%), Gaps = 27/247 (10%) Query: 3 SIRNKLLLWLGLGLFSIIVLAGVALYFQARGEANQIFDYQMRQIAASL-----PRQAFSP 57 SIR LL WL L + ++ Y+ A A FD + L RQ + Sbjct: 7 SIRRDLLKWLIAPLLLVNLIGAGLTYWLAWLPAQHAFDQNLMDSTWGLYAQVRHRQERTT 66 Query: 58 ISPGQQFPEL-----EDEIMMQIWDSRGSVIYHSHARGAMPRQAELGF-----ANVRGPN 107 QQ ++ D + ++ G ++ +P +RG Sbjct: 67 AELTQQAEQILRSNHSDTTFFAVRNTEGQIVVGDKGFPQLPASDVFDRPINYDGEMRGEP 126 Query: 108 GMWRVYSAQIGSTVVQVAQPQSARDEIAAQMAVKTVVPLLLLFPLIGVLSW-------VA 160 ++ + V+ VA ++ R A + LL L G L++ VA Sbjct: 127 VRIAAMQVRVKNGVIWVAVAETIRKRDRAHYTI-----LLSFLVLDGALTFASIFVVLVA 181 Query: 161 VSRGLAPVRKAAAEVAARDMNSLQPLSDVGMPQEIQPLTHALNDLLARLKHATETQRAFV 220 V RGL P++ + RD L + G P E+QPL A+N+L+AR+ + Q+ F+ Sbjct: 182 VRRGLRPLKSLQRNLEQRDHGKLGAIDGRGAPVELQPLIVAMNELMARINKGEQAQQNFM 241 Query: 221 ADAAHEL 227 AD AH+L Sbjct: 242 ADVAHQL 248 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.134 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 587,226 Number of extensions: 20446 Number of successful extensions: 85 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 85 Number of HSP's successfully gapped: 8 Length of query: 233 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 151 Effective length of database: 1,231,600 Effective search space: 185971600 Effective search space used: 185971600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 129 (54.3 bits)