BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0072.p
         (173 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313676|ref|YP_003777768.1| NADPH-quinone reductase [Herbas...   292   1e-80

>gi|300313676|ref|YP_003777768.1| NADPH-quinone reductase
           [Herbaspirillum seropedicae SmR1]
          Length = 173

 Score =  292 bits (747), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 139/173 (80%), Positives = 151/173 (87%)

Query: 1   MSKVLILYAHPAAELSGTNRLMLEAAARLPGVTVHDLYEHYPDFHIDVEHEQQLLSQAEL 60
           M K LILYAHP AELS TNRL+L+AAARLP V +HDLYEHYPDFHIDVEHEQQLL   EL
Sbjct: 1   MPKALILYAHPTAELSRTNRLLLDAAARLPEVQIHDLYEHYPDFHIDVEHEQQLLGTVEL 60

Query: 61  VVMQHPIHWYSMPALQKEWLDRVLARGWAFGHDGHALEGKRFWLVASTGGETASYQSTGR 120
           +VMQHPIHWYSMPALQK+WLD VL RGWAFGH GHAL GKRFWLVA+TGGE A+Y+  GR
Sbjct: 61  IVMQHPIHWYSMPALQKQWLDSVLTRGWAFGHGGHALHGKRFWLVATTGGEEAAYRPQGR 120

Query: 121 HGHPFADFLPPYQQTARLCGMQWVEPLILHGAHHVPPVEFQRHVERYLEGLQA 173
           HGH FADFLPPYQQTA LCGMQW EPLILHGAHH+PP +FQRH++ YL GLQA
Sbjct: 121 HGHRFADFLPPYQQTAALCGMQWQEPLILHGAHHIPPEQFQRHLQHYLAGLQA 173


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.137    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 634,990
Number of extensions: 26397
Number of successful extensions: 81
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 1
Length of query: 173
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 94
Effective length of database: 1,245,805
Effective search space: 117105670
Effective search space used: 117105670
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)