BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0071.p
         (389 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313675|ref|YP_003777767.1| glutamine amidotransferase [Her...   615   e-177

>gi|300313675|ref|YP_003777767.1| glutamine amidotransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 378

 Score =  615 bits (1586), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 329/389 (84%), Positives = 345/389 (88%), Gaps = 11/389 (2%)

Query: 1   MSDIQDSEANLPPDRSPGAVPAKPVSADASGTPAASQNPAQPAAAPATTVVAAPAASPAV 60
           MSDIQDSEANLPPDR   + PA+PVSADASGTPAASQ PA  AAAPA     A AA PAV
Sbjct: 1   MSDIQDSEANLPPDRP--STPAQPVSADASGTPAASQTPAPAAAAPAAPAPVAAAAPPAV 58

Query: 61  PAVEAVTPPAQPGAQPATEAAHGQTADQAQQRIYTSLPPPPHHAGDAPWAQTWRFLTARL 120
           P  +         +  +  A   Q A Q+    Y+++PPP HHAGDAPWAQTWRFLTARL
Sbjct: 59  PPAQP--------SPESAPAGQAQQAQQSAHSPYSAVPPP-HHAGDAPWAQTWRFLTARL 109

Query: 121 RQLSDKAGRRVMQRTLKIGVSARIFHPESGAKGLRSKTLQYLEESIAQWVMSRDVLVFMI 180
           RQLSDKAGRRVMQRTLKIGVSARIFHPE+GAKGLRSKTLQYLEESIAQWVMSRDVLVFMI
Sbjct: 110 RQLSDKAGRRVMQRTLKIGVSARIFHPEAGAKGLRSKTLQYLEESIAQWVMSRDVLVFMI 169

Query: 181 PTVNTNGLVHPSNIRLRDYAKHLDGLVLQGGADVSPQSYAQAATRPEWSGDRVRDMYELE 240
           PTVNTNGLVHPSNIRLRDYAKHLDGLVLQGGADVSPQSYAQ+ATRPEWSGDRVRDMYELE
Sbjct: 170 PTVNTNGLVHPSNIRLRDYAKHLDGLVLQGGADVSPQSYAQSATRPEWSGDRVRDMYELE 229

Query: 241 LLHEFIEAGKPVLGICRGCQLINVAFGGTLYQDIATDVPTAIPHVNEQYDSNYHALHFPQ 300
           LLHEFIEAGKPVLGICRGCQLINVAFGGTLYQDIATDVPTAIPHVNEQYDSNYH LHFPQ
Sbjct: 230 LLHEFIEAGKPVLGICRGCQLINVAFGGTLYQDIATDVPTAIPHVNEQYDSNYHTLHFPQ 289

Query: 301 GSSLAGMVKTENAIVNSIHHQAVHNLGRDLSVEAVSGPDQIVEAIRYRKAPFVMGLQWHP 360
           GSSLA ++K ENA+VNSIHHQAV +LGRDLSVEAVSGPDQIVEAIRYRKAPFVMGLQWHP
Sbjct: 290 GSSLANLLKAENAVVNSIHHQAVRDLGRDLSVEAVSGPDQIVEAIRYRKAPFVMGLQWHP 349

Query: 361 EFHRAGGPELLDCTPILDSFLRAARETRF 389
           EFHRAG PELLDCTP+LDSFLRAARETRF
Sbjct: 350 EFHRAGSPELLDCTPVLDSFLRAARETRF 378


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.132    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,172,857
Number of extensions: 46945
Number of successful extensions: 204
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 203
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 302
Effective length of database: 1,207,925
Effective search space: 364793350
Effective search space used: 364793350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)