BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0062.p
         (498 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312978|ref|YP_003777070.1| ADP-heptose synthase [Herbaspir...    83   5e-17

>gi|300312978|ref|YP_003777070.1| ADP-heptose synthase
           [Herbaspirillum seropedicae SmR1]
          Length = 310

 Score = 83.2 bits (204), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 81/321 (25%), Positives = 139/321 (43%), Gaps = 16/321 (4%)

Query: 173 RSTVEKFKGLRVAVLGDLIVDEYVSCEALGMSQEDPTLVVTPIMQERFIGGAGIVASHAC 232
           +  V  +   R+ V+GD+++D Y   E   +S E P  VV    +E  +GGA  VA +  
Sbjct: 3   KDLVSAWSNARILVVGDVMLDRYWFGEVNRISPEAPVPVVRVERKEERLGGAANVARNIA 62

Query: 233 KLGAQVNYFSVAGKDAAADFAREKLSEYHVTATLFEDDSRPTTLKQRFRAAGKTLLRVSH 292
            LGAQ     V G D  A      L E  + + L  D S  T +K R     + L+R+  
Sbjct: 63  SLGAQTALLGVTGDDEPARVMDAMLREMGIASHLNRDPSISTIVKLRVIGRQQQLVRI-D 121

Query: 293 LRQHDIEPRLAQRYAEAVIATLDNCDLVIFSDFNYGCLPQAVVDQLVEACVERGIPFVAD 352
             +   +  L  +  +      D  D+++FSD+  G L    V +++    + G   + D
Sbjct: 122 FEEAPTDTVLRDKLTQFNTLVAD-YDVILFSDYAKGSLVN--VAEMIATARKLGKRILVD 178

Query: 353 SQSSSQMGDVSRFRGAMLLTPTEREARLAVRDYSS--GLVVLAEKLRQRSQSENIILTLG 410
            +      D  R+ GA LLTP + E    V  + +   L   A+KLR   Q E ++LT  
Sbjct: 179 PKGD----DFQRYVGASLLTPNKSELVRIVGQWKNEDDLTARAQKLRAELQLEALLLTRS 234

Query: 411 AEGILAHAQSEGELDWLTDRLPAFNSSPKDTAGAGDSFLTCTSMAMTVGVDIWQSMYLGS 470
            EG+  +   E          P       D +GAGD+ +   ++ +  G  + +++ + +
Sbjct: 235 EEGMSLYRDGE------VTHFPTMAREVFDVSGAGDTVIGTLAVMLGAGASLVEAVTMAN 288

Query: 471 IAAACQVSRVGNIPLSASDLM 491
            A    V ++G   ++  +L+
Sbjct: 289 RAGGIVVGKLGTATVTREELL 309


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,535,626
Number of extensions: 64926
Number of successful extensions: 203
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 202
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 409
Effective length of database: 1,198,455
Effective search space: 490168095
Effective search space used: 490168095
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)