BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0043.p
         (389 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312062|ref|YP_003776154.1| membrane-anchored group 1 glyco...    59   5e-10

>gi|300312062|ref|YP_003776154.1| membrane-anchored group 1
           glycosyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 406

 Score = 59.3 bits (142), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 130/311 (41%), Gaps = 34/311 (10%)

Query: 104 LLHRYTPGLMSLDVLRTIFSSKVPIIYESDDLLNEIPADHPEAQQGA-------AWKTGI 156
           +LH ++P L ++  LR      +P++YE      +   DH  ++ G        A +T  
Sbjct: 98  VLHAHSPALNAIAALRVGRRLGIPVVYEVRAFWEDAAVDHGTSRAGGLRYRLTRALET-- 155

Query: 157 EFAVRHAKAVVVSTEFLAAKYRELN---AAVHVLPNYIDFDLFYRPVPQSTAP------- 206
            +A++ A AV    E L A         A + V+PN ++ D F   + Q   P       
Sbjct: 156 -YALKRADAVTTICEGLRADIAARGVPLAKMTVIPNAVNIDDF--SLGQQADPALARQLG 212

Query: 207 -DGRINIGLLGSSIQPSNFALVDQALRALVERYGTRLHIDFVGWECPQGWAGHPLTTFHT 265
            +G+  +G +GS        ++ QAL  L+      + +  VG   PQ  A H L     
Sbjct: 213 LEGKTLLGFIGSFYAYEGLPVLVQALPQLLA-GNPDVRLLLVGG-GPQERALHALAA-EL 269

Query: 266 FVHQYVDYAAQL------RQWNW-DIALIPLASDEYNQCKSYIKWLDYSAAGIASVFSDV 318
            V   V +A ++      R +N  D+ + P          + +K L+  A G   V SDV
Sbjct: 270 GVSDKVVFAGRVPHEQVQRYYNLIDVLVYPRLKMRLTDLVTPLKPLEAMAQGRLVVASDV 329

Query: 319 SVYSQVVTHEVTGLLMPNSS-QAWLDAITQLIESPGKRHALAAAGQKEVREGFDLAAKAA 377
             + ++++   TG+L    S +A    +  L+  P +   L AAG+  V    + AA  A
Sbjct: 330 GGHRELISDGRTGVLFAAGSPEALAQKVLALLAEPARWPQLRAAGRHFVETERNWAASVA 389

Query: 378 HYHDVYSRCLA 388
            Y  +Y R +A
Sbjct: 390 RYQQIYPRLVA 400


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,226,202
Number of extensions: 49059
Number of successful extensions: 137
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 302
Effective length of database: 1,207,925
Effective search space: 364793350
Effective search space used: 364793350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)