BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0037.p (313 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313656|ref|YP_003777748.1| dTDP-4-dehydrorhamnose reductas... 269 2e-73 gi|300313503|ref|YP_003777595.1| dTDP-4-dehydrorhamnose reductas... 63 3e-11 >gi|300313656|ref|YP_003777748.1| dTDP-4-dehydrorhamnose reductase [Herbaspirillum seropedicae SmR1] Length = 312 Score = 269 bits (687), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 147/297 (49%), Positives = 194/297 (65%), Gaps = 4/297 (1%) Query: 1 MRILLTGSSGQVGSEFLRRLRAMPAGLDVIAPVRGQLDLTDADALRTAVREARPDLIIHP 60 MRILLTG+SGQ+G + L+ + A +++AP +LDL D AL++ +++ARP LI++ Sbjct: 1 MRILLTGASGQLG-QVLQPMLARHG--ELLAPSSRELDLADRQALQSFLQQARPGLIVNA 57 Query: 61 AAYTAVVKAESEPELARRINTDAPALLAQEAARLGAALIHFSTDYVFDGQHPGAYTEDMP 120 AAYTAV KAES+ A +N AP +LAQ+A LGA L+HFSTDYVFDG+ Y E P Sbjct: 58 AAYTAVDKAESDVARAEAVNALAPMILAQQAQMLGAPLVHFSTDYVFDGKSARPYVETDP 117 Query: 121 THPLNVYGASKRDGELAIAASGAAHWILRTSWVYNRTGNNFMKTAIRLAQQKESYTIVGD 180 T PLNVYG +K GE IAA A+WILRTSWVY G+NF+KT RLA ++E T+V D Sbjct: 118 TGPLNVYGRTKLAGEQGIAAHCDAYWILRTSWVYGCYGSNFLKTMWRLAGEREYLTVVDD 177 Query: 181 QFGAPTWASTIAAVCCRMLAGAEGGREKVAATSGIYHLTAQGATSWHGYAQLVARELMAR 240 Q GAPTW TIA RMLA ++ V T+G+YHL+A GATSWHG+AQ + + L A+ Sbjct: 178 QIGAPTWTHTIADTLARMLAHGADAQQSVRDTTGLYHLSAGGATSWHGFAQRILQLLRAQ 237 Query: 241 GVPVRLKGLDQITPVPTSSYPTPPERPLNSRLDCSKLEQRFGITLPAWDEDATACLQ 297 G L + P+ + +YP +RP NSRLD L + F ++LP W+E CL Sbjct: 238 GETALLDPA-LVRPIASDAYPAIAQRPRNSRLDTGLLRRTFSLSLPTWEEALERCLH 293 >gi|300313503|ref|YP_003777595.1| dTDP-4-dehydrorhamnose reductase [Herbaspirillum seropedicae SmR1] Length = 285 Score = 62.8 bits (151), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 56/182 (30%), Positives = 81/182 (44%), Gaps = 15/182 (8%) Query: 1 MRILLTGSSGQVGSEFLRRLRAMPA----------GLDVIAPVRGQLDLTDADALRTAVR 50 M++L+ G+SG +G L P +V APV +DL++ D + Sbjct: 1 MKVLVLGASGMIGRTMFHVLSQRPGWEVCAIVRAKTFEVGAPVVTGIDLSNQDHMERLFA 60 Query: 51 EARPDLIIHPAAYTAVVKAESEPELARRINTDAPALLAQEAARLGAALIHFSTDYVFDGQ 110 + RPD++++ A T + + A +N P LAQ A LIH STD VF G Sbjct: 61 QRRPDVVVNCAGLTKHLPEGNAHIPALTMNALLPHRLAQLCDIADARLIHVSTDCVFSGD 120 Query: 111 HPGAYTEDMPTHPLNVYGASKRDGELAIAASGAAHWILRTSWVYNRTGNNFMKTAIRLAQ 170 G Y E +VYG +K GE+ +G A LRTS + + G F LAQ Sbjct: 121 -AGNYKEQDTPDATDVYGRTKALGEV---TAGNA-LTLRTSTIGHEHGTQFGLLEWFLAQ 175 Query: 171 QK 172 + Sbjct: 176 TQ 177 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.133 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,023,525 Number of extensions: 43687 Number of successful extensions: 188 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 187 Number of HSP's successfully gapped: 2 Length of query: 313 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 228 Effective length of database: 1,217,395 Effective search space: 277566060 Effective search space used: 277566060 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)