BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0035.p
         (358 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313691|ref|YP_003777783.1| CDP-glucose-4,6-dehydratase [He...   535   e-153

>gi|300313691|ref|YP_003777783.1| CDP-glucose-4,6-dehydratase
           [Herbaspirillum seropedicae SmR1]
          Length = 357

 Score =  535 bits (1377), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 256/358 (71%), Positives = 299/358 (83%), Gaps = 1/358 (0%)

Query: 1   MSNFWRDKRVFITGHTGFKGGWLSLWLHMMGAKVSGYSLPAPTHPSLFELARLHDCVQTT 60
           M+NFWRDKRVFITGHTGFKG WL+LWLH+MGAKVSGYSLPAPT PSLF LARLH+CVQTT
Sbjct: 1   MANFWRDKRVFITGHTGFKGSWLTLWLHLMGAKVSGYSLPAPTSPSLFHLARLHNCVQTT 60

Query: 61  TGDVRDPVHLAQTMAAVQPDVVFHLAAQALVRDSYANPVDNYATNVMGTVHVLEAVRHTP 120
           TGDVRDP HLA+TMAAVQPDVVFHLA Q  +  SY  P+D +ATNVMGT H+LEAVR TP
Sbjct: 61  TGDVRDPKHLAETMAAVQPDVVFHLAGQPQIEHSYLTPLDTFATNVMGTAHLLEAVRSTP 120

Query: 121 SVRSVVVVTSDKCYENREWLWGYREDDPMGGHDPYSSSKGIAELVTSAYRRSFFGERDAG 180
           SVR+VVVV+S+KCYENREWLWGYREDDPMGGHDP+SSSKG AELVT+AYRRSFF      
Sbjct: 121 SVRAVVVVSSNKCYENREWLWGYREDDPMGGHDPFSSSKGAAELVTAAYRRSFFSADPDS 180

Query: 181 RAAIASVRAGNVIGGGDFAADRLLPDVIRALQAQTPLNIRHPGAIRPWQFVLEPLSGYLQ 240
              +ASVR GNVIGGGDFAADRL+PD IRAL+   P+ IR P A+RPWQFVLEPLSGYLQ
Sbjct: 181 PVGVASVRTGNVIGGGDFAADRLIPDFIRALETDQPVTIRQPHAVRPWQFVLEPLSGYLQ 240

Query: 241 IARLLYEEGPRHAEAWNFGPADADPRNVGQLCESFNQALRQHDIAPLDIRVESQAHAPHE 300
           I ++LYE G  +AEAWNFGP D D + V QLC +FN +L+++D+ P+++R+E QA A   
Sbjct: 241 IGKMLYEHGASYAEAWNFGPTDTDLQTVSQLCATFNHSLQKNDVEPVEVRLE-QAGATLS 299

Query: 301 AHLLRLDISKARQRLNWTPKLELTVALQMTARWYAAYLNNDDLRTLTEEQIGFYQTLT 358
             +LRLD SKARQRL+W P++EL  AL++TA+WYA YLNN+DLR L+E QI FYQ+LT
Sbjct: 300 EAVLRLDTSKARQRLDWIPRMELYTALELTAQWYAGYLNNEDLRALSENQIAFYQSLT 357


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,187,903
Number of extensions: 49247
Number of successful extensions: 139
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 1
Length of query: 358
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 272
Effective length of database: 1,212,660
Effective search space: 329843520
Effective search space used: 329843520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)