BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0022.p
         (270 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313643|ref|YP_003777735.1| hypothetical protein Hsero_4359...   537   e-154
gi|300313084|ref|YP_003777176.1| hypothetical protein Hsero_3790...   131   6e-32

>gi|300313643|ref|YP_003777735.1| hypothetical protein Hsero_4359
           [Herbaspirillum seropedicae SmR1]
          Length = 270

 Score =  537 bits (1383), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 255/270 (94%), Positives = 264/270 (97%)

Query: 1   MAKKIGPQFIVHPKFVLKESEASTKPLSSGDKETDRATVQRLAAEIGLQQQMLYAGHKHK 60
           MAKKIGPQFIVHPKFVLKE+EASTKPLSSGDKE DRA VQRL+  IG+QQQMLYAGHKHK
Sbjct: 1   MAKKIGPQFIVHPKFVLKETEASTKPLSSGDKEKDRANVQRLSGLIGVQQQMLYAGHKHK 60

Query: 61  VLVILQGMDTSGKDGTVNDVFAAVNPQGIRIANFKGPTAIELAHDYLWRVHAQVPVAGEI 120
           VLV+LQGMDTSGKDGTVNDVFAAVNPQGIRI+NFKGPTAIELAHDYLWRVHAQVPVAGEI
Sbjct: 61  VLVVLQGMDTSGKDGTVNDVFAAVNPQGIRISNFKGPTAIELAHDYLWRVHAQVPVAGEI 120

Query: 121 AVFNRSHYEDVLITRVHDWIDDKECKRRYRQINDFERMLWETGTVVLKFFLHISKAEQKS 180
           AVFNRSHYEDVLITRVHDWIDDKEC+RRYRQINDFERMLWETGTVVLKFFLHISKAEQKS
Sbjct: 121 AVFNRSHYEDVLITRVHDWIDDKECQRRYRQINDFERMLWETGTVVLKFFLHISKAEQKS 180

Query: 181 RLQSRIDDPNKHWKFDPQDLAERKFWDAYQQRYQEVLRQTSTLHAPWYVVPADSKTHRNL 240
           RLQSRIDDPNKHWKFDPQDLAERKFWDAYQ RYQEVLR TSTLHAPWYVVPADSKTHRNL
Sbjct: 181 RLQSRIDDPNKHWKFDPQDLAERKFWDAYQTRYQEVLRATSTLHAPWYVVPADSKTHRNL 240

Query: 241 LVANVVLETLQKLKLRFPDPKPELKDLKFD 270
           +VANVVLETLQKLKL+FPDPKPELK+LKFD
Sbjct: 241 VVANVVLETLQKLKLKFPDPKPELKNLKFD 270


>gi|300313084|ref|YP_003777176.1| hypothetical protein Hsero_3790
           [Herbaspirillum seropedicae SmR1]
          Length = 304

 Score =  131 bits (329), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 74/214 (34%), Positives = 113/214 (52%), Gaps = 6/214 (2%)

Query: 41  RLAAE-IGLQQQMLYAGHKHKVLVILQGMDTSGKDGTVNDVFAAVNPQGIRIANFKGPTA 99
           RL  E + LQ  ++  GHK  V+++ +G D +GK G +  +   +NP+  R+A    P  
Sbjct: 60  RLQGELVKLQDWVVQTGHK--VVIVFEGRDAAGKGGVIKRITQRLNPRVARVAALPAPND 117

Query: 100 IELAHDYLWRVHAQVPVAGEIAVFNRSHYEDVLITRVHDWIDDKECKRRYRQINDFERML 159
            E    Y  R  + +P AGEI +F+RS Y    + RV  +  D++ +  +R + +FERML
Sbjct: 118 RERTQWYFQRYVSHLPAAGEIVLFDRSWYNRAGVERVMGFCSDEQYEEFFRSVPEFERML 177

Query: 160 WETGTVVLKFFLHISKAEQKSRLQSRIDDPNKHWKFDPQDLAERKFWDAYQQRYQEVLRQ 219
              G  V+K++  I+  EQ  R  SRI DP K WK  P DL  R+ W+ Y +  + +L +
Sbjct: 178 TRAGIQVIKYWFSITDEEQHLRFLSRIHDPLKQWKLSPMDLESRRRWEEYTKAKEVMLER 237

Query: 220 TSTLHAPWYVVPADSKTHRNLLVANVVLETLQKL 253
           T    APW+VV A  K    L   N +   LQ++
Sbjct: 238 THIPEAPWWVVQAVDKKKARL---NCIHHLLQQM 268


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 837,360
Number of extensions: 32899
Number of successful extensions: 99
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 2
Length of query: 270
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 186
Effective length of database: 1,222,130
Effective search space: 227316180
Effective search space used: 227316180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)