BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0020.p
         (366 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313641|ref|YP_003777733.1| uroporphyrinogen decarboxylase ...   698   0.0  

>gi|300313641|ref|YP_003777733.1| uroporphyrinogen decarboxylase
           [Herbaspirillum seropedicae SmR1]
          Length = 364

 Score =  698 bits (1801), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/363 (93%), Positives = 355/363 (97%), Gaps = 1/363 (0%)

Query: 3   SSSSMSTFAPLKNDTFLRALLRQPTDYTPLWLMRQAGRYLPEYRATRARAGSFMGLATNP 62
           SSSSMSTFAPLKNDTFLRALLRQPTDYTP+WLMRQAGRYLPEYRATRARAGSFMGLATNP
Sbjct: 2   SSSSMSTFAPLKNDTFLRALLRQPTDYTPMWLMRQAGRYLPEYRATRARAGSFMGLATNP 61

Query: 63  DYATEVTLQPLERYPLDAAILFSDILTVPDAMGLGLYFADGEGPKFERPLRDEAAIQALQ 122
           DYATEVTLQPLERYPLDAAILFSDILTVPDAMGLGLYFA+GEGPKF+RPLRDEAA++AL+
Sbjct: 62  DYATEVTLQPLERYPLDAAILFSDILTVPDAMGLGLYFAEGEGPKFQRPLRDEAAVKALR 121

Query: 123 APDLGKLDYVFKAVTQIRRELDGRVPLIGFSGSPWTLACYMVEGGGSDDFRLVKSLLYRR 182
           APDLGKLDYVFKAVTQIRRELDGRVPLIGFSGSPWTLACYMVEGGGSDDFRLVKS+LY R
Sbjct: 122 APDLGKLDYVFKAVTQIRRELDGRVPLIGFSGSPWTLACYMVEGGGSDDFRLVKSMLYSR 181

Query: 183 PDLMHHILKTNADAVAAYLNAQIAAGAQAVMIFDTWGGALADGIYQQFSLAYMQQVVSQL 242
           PDLMHHIL+TNADAVAAYLNAQI AGAQAVMIFDTWGGALADG+YQQFSL+YMQQVVSQL
Sbjct: 182 PDLMHHILRTNADAVAAYLNAQIDAGAQAVMIFDTWGGALADGVYQQFSLSYMQQVVSQL 241

Query: 243 QRQQDGQQIPVIVFTKGGGLWLEQIAAKVGADAVGLDWTVNLREARRRVGDKVALQGNLD 302
           +R+Q GQQ+PVIVFTKGGGLWLEQIAA +GADAVGLDWTVNL +AR+RVGDKVALQGNLD
Sbjct: 242 KREQGGQQVPVIVFTKGGGLWLEQIAA-IGADAVGLDWTVNLGQARQRVGDKVALQGNLD 300

Query: 303 PNVLFAGDDAIRAEVRKLLESFGRPGAGSGHVFNLGHGISQHTPPEAVATLAQAVHEISR 362
           PNVLFAGDDAIRAEVRKLLESFGRPGAGSGHVFNLGHGISQHTPPEAV TL QAVHE SR
Sbjct: 301 PNVLFAGDDAIRAEVRKLLESFGRPGAGSGHVFNLGHGISQHTPPEAVTTLVQAVHEFSR 360

Query: 363 SLR 365
           +LR
Sbjct: 361 ALR 363


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,193,885
Number of extensions: 53420
Number of successful extensions: 167
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 280
Effective length of database: 1,212,660
Effective search space: 339544800
Effective search space used: 339544800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)