BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0019.p
         (727 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313640|ref|YP_003777732.1| primosomal protein N' [Herbaspi...  1201   0.0  

>gi|300313640|ref|YP_003777732.1| primosomal protein N'
           [Herbaspirillum seropedicae SmR1]
          Length = 708

 Score = 1201 bits (3108), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 622/727 (85%), Positives = 651/727 (89%), Gaps = 19/727 (2%)

Query: 1   VEQRLLQVALDTPLHTVFDYRWQPATPEEPMPAIGQLVVVPFGRREAVGVVVGHADQTDL 60
           +EQR+LQVALDTPLHTVFDY WQ     E +PAIGQLVVVPFGRREAVGVVVGH  Q+ L
Sbjct: 1   MEQRILQVALDTPLHTVFDYAWQAQAEGELVPAIGQLVVVPFGRREAVGVVVGHVSQSAL 60

Query: 61  QADKIKDVIAVRHQLPPMSAHWLALCGFAADYYQRPLGEVMLPGLPKNLRALTTVALDKA 120
           +  KIK VIAVRHQLPP+SAHWLALCGFAADYYQRPLGEVMLPGLPKNLRAL+TVALDKA
Sbjct: 61  EQGKIKQVIAVRHQLPPLSAHWLALCGFAADYYQRPLGEVMLPGLPKNLRALSTVALDKA 120

Query: 121 LKALGRLVAPKKTKARRKTRAEAEAITAEAAEPGLQAAPDPLKLGEAPSLNPAQQQAVDA 180
           L ALGRL APKK+KAR K RA  E    +          DP++  +AP+LN AQQ+A DA
Sbjct: 121 LNALGRLSAPKKSKARSKARAHPEDEARQETAAADATPADPMQFAQAPALNAAQQEAADA 180

Query: 181 IAGATGFAPLLLYGVTGSGKTEVYLQAAAAILRRAADEAAQGNKEAPTGTANPGQPAPAP 240
           IA A  FAPLLLYGVTGSGKTEVYLQAAAAILRRAA+   +                   
Sbjct: 181 IAAAHAFAPLLLYGVTGSGKTEVYLQAAAAILRRAAESGER------------------- 221

Query: 241 AQILVLVPEINLTPQLEGNIRARFPHLNVVALHSGLAEGERARNWLAAHLGQAHIVLGTR 300
           AQILVLVPEINLTPQLEGNIRARFPHLNVVALHSGLAEGERARNWLAAHLGQA IVLGTR
Sbjct: 222 AQILVLVPEINLTPQLEGNIRARFPHLNVVALHSGLAEGERARNWLAAHLGQAQIVLGTR 281

Query: 301 LAILSSLPSLKLIVIDEEHDPSYKQQEGLRYSARDLAVWRAHQLGIPVVLGSATPSLETW 360
           LAIL+SLP+LKLIVIDEEHDPSYKQQEGLRYSARDLAVWRAHQLGIPVVLGSATPSLETW
Sbjct: 282 LAILASLPALKLIVIDEEHDPSYKQQEGLRYSARDLAVWRAHQLGIPVVLGSATPSLETW 341

Query: 361 HHAQAGRYRRLELRQRAAQQAVLPTVKVIDMERDKPVDGLTAGLIAAVHKRLEQGEQSLL 420
            HAQAGRYRRLELRQRAA++AVLPTVKVID+ERDKPVDGLTA LIAAV KRLEQGEQSLL
Sbjct: 342 QHAQAGRYRRLELRQRAAREAVLPTVKVIDLERDKPVDGLTATLIAAVRKRLEQGEQSLL 401

Query: 421 FLNRRGYAPVLACDACGWISNCMRCDAFMVVHRPERRLRCHHCSLELAIPRACPTCGNVD 480
           FLNRRGYAPVLACDACGWISNCMRCDAFMVVHRPERRLRCHHCSLEL IPRACPTCGNVD
Sbjct: 402 FLNRRGYAPVLACDACGWISNCMRCDAFMVVHRPERRLRCHHCSLELHIPRACPTCGNVD 461

Query: 481 LQPLGRGTQRVEEGLGAIFPGARVLRIDADSTRLKGSAQSAFDSVHRGEVDILVGTQMVA 540
           LQPLGRGTQRVEEGL AIFP ARVLRIDADSTRLKGSAQSAFDSVHRGEVDIL+GTQMVA
Sbjct: 462 LQPLGRGTQRVEEGLQAIFPEARVLRIDADSTRLKGSAQSAFDSVHRGEVDILIGTQMVA 521

Query: 541 KGHDFKKLTLVGVLNPDTALFSHDYRASERLFAQLMQVAGRAGRAGLSADGSSGEVLIQT 600
           KGHDFKKLTLVGVLNPDTALFSHDYRASERLFAQLMQVAGRAGRAGLSADGSSGEVLIQT
Sbjct: 522 KGHDFKKLTLVGVLNPDTALFSHDYRASERLFAQLMQVAGRAGRAGLSADGSSGEVLIQT 581

Query: 601 RYPHHPLYQAVMRHDYDGFAGDLLDERRQAHFPPFMYQALLRAEARELDTAMAFLKEAAA 660
           RYPHHPLYQAV+RHDYDGFAG+LL+ERRQAHFPPFMYQALLRAEARELDTAMAFLK+AA 
Sbjct: 582 RYPHHPLYQAVIRHDYDGFAGELLEERRQAHFPPFMYQALLRAEARELDTAMAFLKDAAT 641

Query: 661 LLDAPAITINEPIPMTMMRVANVERAQLLIECPSRPALQGFLKHWLAELRQLKTRVRWSL 720
           LL+APAITINEPIPMT+MRVANVERAQLLIEC SRP LQ FLK WLA LRQ+KTR RWSL
Sbjct: 642 LLEAPAITINEPIPMTLMRVANVERAQLLIECASRPVLQAFLKQWLALLRQVKTRARWSL 701

Query: 721 EVDPVDI 727
           EVDPVDI
Sbjct: 702 EVDPVDI 708


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,223,648
Number of extensions: 92290
Number of successful extensions: 298
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 296
Number of HSP's successfully gapped: 1
Length of query: 727
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 635
Effective length of database: 1,184,250
Effective search space: 751998750
Effective search space used: 751998750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 134 (56.2 bits)