BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0017.p
         (151 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313639|ref|YP_003777731.1| arginyl-tRNA synthetase [Herbas...   300   3e-83

>gi|300313639|ref|YP_003777731.1| arginyl-tRNA synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 577

 Score =  300 bits (769), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 148/151 (98%), Positives = 151/151 (100%)

Query: 1   VRFFLISRKADTEFVFDVDLALAQSDENPVYYVQYAHARICTVLGKSGVDEEALKTTADL 60
           VRFFLISRKADTEFVFDVDLALAQSDENPVYYVQYAHARICTVLGKSGVDEEALK++ADL
Sbjct: 427 VRFFLISRKADTEFVFDVDLALAQSDENPVYYVQYAHARICTVLGKSGVDEEALKSSADL 486

Query: 61  SLLTAPREASLLAKLAEYPDMLAHALQELGPHQVAFYLRDLAGELHSYYNAERVLVDDVP 120
           SLLTAPREA+LLAKLAEYPDMLAHALQELGPHQVAFYLRDLAGELHSYYNAERVLVDDVP
Sbjct: 487 SLLTAPREATLLAKLAEYPDMLAHALQELGPHQVAFYLRDLAGELHSYYNAERVLVDDVP 546

Query: 121 TRSARLALLSATRQVLRNGLALLGVSAPARM 151
           TRSARLALLSATRQVLRNGLALLGVSAPARM
Sbjct: 547 TRSARLALLSATRQVLRNGLALLGVSAPARM 577


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 454,455
Number of extensions: 17163
Number of successful extensions: 59
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 1
Length of query: 151
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 74
Effective length of database: 1,255,275
Effective search space: 92890350
Effective search space used: 92890350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)