BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0013.p
         (317 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313635|ref|YP_003777727.1| methionyl-tRNA formyltransferas...   578   e-166
gi|300311402|ref|YP_003775494.1| methionyl-tRNA formyltransferas...    91   1e-19

>gi|300313635|ref|YP_003777727.1| methionyl-tRNA formyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 317

 Score =  578 bits (1490), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 293/317 (92%), Positives = 308/317 (97%)

Query: 1   MKIIFAGTPEFAAVALEALYAAGHEITLVLTQPDRPAGRGMQLQASPVKQCAIKHGTPVA 60
           MKIIFAGTPEFAAVALEALYAAGHEITLVLTQPDRPAGRGMQLQASPVKQCA+KHGTPVA
Sbjct: 1   MKIIFAGTPEFAAVALEALYAAGHEITLVLTQPDRPAGRGMQLQASPVKQCALKHGTPVA 60

Query: 61  QPVSLRLNGKYPDVAQEAHALLQSTPHDVMVVAAYGLILPRSVLDIPRLGCINIHGSLLP 120
           QPVSLRL+GKYP+VAQEAHALL+STPHDVM+VAAYGLILPRSVLDIPR GCINIHGSLLP
Sbjct: 61  QPVSLRLDGKYPEVAQEAHALLRSTPHDVMIVAAYGLILPRSVLDIPRYGCINIHGSLLP 120

Query: 121 RWRGAAPIHRAIEAGDTETGITIMQMEEGLDTGPMMLIESVPIAEDDTTGSLHDKLAALG 180
           RWRGAAPIHRAIEAGD ETGITIMQMEEGLDTGPMMLIES+PI+++DTTGSLHDKLAALG
Sbjct: 121 RWRGAAPIHRAIEAGDAETGITIMQMEEGLDTGPMMLIESLPISDEDTTGSLHDKLAALG 180

Query: 181 GKMIVEAIARLEQGTLPATPQPEEGANYAAKIAKEEAALDFTQSAEQLARRIRAFNPFPG 240
            KMIVEA+ +LEQGTLPATPQPE+GANYAAKIAKEEAALDF+QSAEQLARRIRAFNPFPG
Sbjct: 181 AKMIVEAMEKLEQGTLPATPQPEQGANYAAKIAKEEAALDFSQSAEQLARRIRAFNPFPG 240

Query: 241 ATGRFGDTVVKLWQARPVKVAQPGEPGQVLSADAQAGIVVACGEGALLLTELQKPGGKRL 300
           ATGRFGDTVVKLW+AR V VAQ GEPGQVLSADAQ GIVVACGEGALLLTELQKPGGKRL
Sbjct: 241 ATGRFGDTVVKLWKARAVTVAQQGEPGQVLSADAQGGIVVACGEGALLLTELQKPGGKRL 300

Query: 301 PAAEFLKGFPLEGGRFA 317
           PAAEFLKGFP+EGGR A
Sbjct: 301 PAAEFLKGFPMEGGRLA 317


>gi|300311402|ref|YP_003775494.1| methionyl-tRNA formyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 305

 Score = 90.5 bits (223), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 114/259 (44%), Gaps = 12/259 (4%)

Query: 1   MKIIFAGTPEFAAVALEALYAAGHEITLVLTQPDRPAGRGMQLQASPVKQCAIKHGTPVA 60
           M  +     +     L+ L A G +++LV+T  D        +    V     +HG    
Sbjct: 1   MNAVVFAYHDVGVRCLKVLLARGVQVSLVVTHEDSATE---NIWFGSVAGVCREHGIACI 57

Query: 61  QPVSLRLNGKYPDVAQEAHALLQSTPHDVMVVAAYGLILPRSVLDIPRLGCINIHGSLLP 120
            P     + K P +     A +Q+   D +    Y  +LP  VL   + G  N+HGSLLP
Sbjct: 58  TPA----DPKSPQLL----AQVQAAQPDFIFSFYYRHMLPVEVLAAAKRGAYNMHGSLLP 109

Query: 121 RWRGAAPIHRAIEAGDTETGITIMQMEEGLDTGPMMLIESVPIAEDDTTGSLHDKLAALG 180
           ++RG  PI+ A+  G+TETG T+ +M    D G ++   SVPI  DDT   +  K+    
Sbjct: 110 KYRGRVPINWAVLHGETETGATLHEMTVKPDAGAIVAQTSVPILPDDTAHEVFGKVVVAA 169

Query: 181 GKMIVEAIARLEQGTLPATPQPEEGANYAAKIAKEEAALDFTQSAEQLARRIRAFN-PFP 239
              +   +  +  G  P+ P      +Y      E+  +D+ ++A ++   +RA   P+P
Sbjct: 170 ELTLWNVLPAMLSGRTPSMPNDLSKGSYYGGRKPEDGRIDWRRTAREVHNLVRAVAPPYP 229

Query: 240 GATGRFGDTVVKLWQARPV 258
           GA     D  + + + R V
Sbjct: 230 GAFEEIADDKITVTRTRLV 248


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.136    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,105,291
Number of extensions: 50268
Number of successful extensions: 177
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 177
Number of HSP's successfully gapped: 2
Length of query: 317
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 232
Effective length of database: 1,217,395
Effective search space: 282435640
Effective search space used: 282435640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)