BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0005.p
         (395 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313629|ref|YP_003777721.1| oxalate/formate antiporter prot...   659   0.0  

>gi|300313629|ref|YP_003777721.1| oxalate/formate antiporter protein
           [Herbaspirillum seropedicae SmR1]
          Length = 416

 Score =  659 bits (1701), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/395 (90%), Positives = 375/395 (94%), Gaps = 2/395 (0%)

Query: 1   MRLCITMILMVVGASGMYVIAVVLPYVQAHYYVDRGLASMPYTLTMLGVGVGGLLMGRMA 60
           MRLCITM+LMVVGASGMYVIAVVLPYVQAHYYVDRGLASMPYTLTMLGVGVGGLLMGRMA
Sbjct: 24  MRLCITMVLMVVGASGMYVIAVVLPYVQAHYYVDRGLASMPYTLTMLGVGVGGLLMGRMA 83

Query: 61  DRSGITRPMMLGGLCLGGGFLAASWAXAQDIWTFMAVHCILIGLLGTSATFSPLVADTSL 120
           DR+GITRP+ LGGLCLGGGF+AAS+A   DIWTFMAVHC+ IGLLGTSATFSPLVADTSL
Sbjct: 84  DRAGITRPLFLGGLCLGGGFIAASYA--PDIWTFMAVHCLFIGLLGTSATFSPLVADTSL 141

Query: 121 WFRKRRGIAVAVCASGNYLGGAIWPPIVQHFVDNYGWQETYRGLGLICILVMCPLALLMR 180
           WFRKRRGIAVAVCASGNYLGGAIWPPIVQHFVD+ GWQ+TY G+G+ C L+MC LALLMR
Sbjct: 142 WFRKRRGIAVAVCASGNYLGGAIWPPIVQHFVDSVGWQQTYIGMGIACSLIMCSLALLMR 201

Query: 181 ARPPVQDSNAATPRAGGGPRPFGLAPGSAQLLLCVVGVACCVAMAMPQVHIVAYCGDLGY 240
           ARPP QDS+AA+ R GGGPRPFGLAPGSAQLLLCV GVACCVAMAMPQVHIVAYCGDLGY
Sbjct: 202 ARPPAQDSSAASARPGGGPRPFGLAPGSAQLLLCVAGVACCVAMAMPQVHIVAYCGDLGY 261

Query: 241 GPARGAQMLSLMLACGVVSRLVSGAICDRIGGLRTLLLGSALQGLSLLLFIPFDSLASLY 300
           GPARGAQMLSLMLACGVVSRLVSGAICDRIGGLRTLLLGS LQGLSLLLFIPFDSLASLY
Sbjct: 262 GPARGAQMLSLMLACGVVSRLVSGAICDRIGGLRTLLLGSMLQGLSLLLFIPFDSLASLY 321

Query: 301 LISALFGLFQGGIVPSYAIIVREYFPAAEAGQRVGAVIMATMFGMALGGWMSGKIFDLTG 360
           LISALFGLFQGGIVPSYAIIVREYFPAAEAGQRVGAVIMATMFGMALGGW+SGKIFD+TG
Sbjct: 322 LISALFGLFQGGIVPSYAIIVREYFPAAEAGQRVGAVIMATMFGMALGGWVSGKIFDMTG 381

Query: 361 SYHAAFANGIAWNLLNLGIAVLLFTRVRGMRLRAA 395
           SYHAAFANGIAWNLLNL IA+ L TRVR + LRAA
Sbjct: 382 SYHAAFANGIAWNLLNLAIALFLLTRVRSLHLRAA 416


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.143    0.457 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,112,906
Number of extensions: 42964
Number of successful extensions: 273
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 272
Number of HSP's successfully gapped: 3
Length of query: 395
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 308
Effective length of database: 1,207,925
Effective search space: 372040900
Effective search space used: 372040900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 131 (55.1 bits)