BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0002.p
         (510 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313626|ref|YP_003777718.1| sporulation protein [Herbaspiri...  1052   0.0  

>gi|300313626|ref|YP_003777718.1| sporulation protein
           [Herbaspirillum seropedicae SmR1]
          Length = 509

 Score = 1052 bits (2721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/510 (98%), Positives = 506/510 (99%), Gaps = 1/510 (0%)

Query: 1   MNSRFKHDPLPCPSDWSFDLIERYNEEIARVAKGYELDIYPIQLEIISAEQMMDAYASHG 60
           MNSRFKHDPLPCPSDWSF+LIERYNEEIARVAKGYELDIYPIQLEIISAEQMMDAYASHG
Sbjct: 1   MNSRFKHDPLPCPSDWSFELIERYNEEIARVAKGYELDIYPIQLEIISAEQMMDAYASHG 60

Query: 61  MPVNYRHWSYGKHFMLTERDYKRGQMGLAYEIVINSDPCIAYLMEENTMTMQALVIAHAA 120
           MPVNYRHWSYGKHFMLTERDYKRGQMGLAYEIVINSDPCIAYLMEENTMTMQALVIAHAA
Sbjct: 61  MPVNYRHWSYGKHFMLTERDYKRGQMGLAYEIVINSDPCIAYLMEENTMTMQALVIAHAA 120

Query: 121 YGHNSFFKGNYLFQLWTDASAIIDYLVYARNYIAECEERHGFERVEELLDSCHALMNYGV 180
           YGHNSFFKGNYLFQLWTDASAIIDYLVYARNYIAECEERHGFERVEELLDSCHALMNYGV
Sbjct: 121 YGHNSFFKGNYLFQLWTDASAIIDYLVYARNYIAECEERHGFERVEELLDSCHALMNYGV 180

Query: 181 DRYKRPQRLSLAQGKXARQREREAYMQSQVNELWRTLPAKKETAAAAVEGRFPSEPQENL 240
           DRYKRPQRLSLAQ K ARQREREAYMQSQVNELWRTLPAKKE  AAAVEGRFPSEPQENL
Sbjct: 181 DRYKRPQRLSLAQEK-ARQREREAYMQSQVNELWRTLPAKKEMTAAAVEGRFPSEPQENL 239

Query: 241 LYFAEKNAPLLEPWEREVIRIVRKVGQYFYPQRQTQVMNEGWATFWHYTLLNTLYDQGRL 300
           LYFAEKNAPLLEPWEREVIRIVRKVGQYFYPQRQTQVMNEGWATFWHYTLLNTLYDQGRL
Sbjct: 240 LYFAEKNAPLLEPWEREVIRIVRKVGQYFYPQRQTQVMNEGWATFWHYTLLNTLYDQGRL 299

Query: 301 TDGFMMEFLHSHSNVVFQPPITKPYYNGINPYALGFSMMSDIRRICENPTNEDREWFPDI 360
           TDGFMMEFLHSHSNVVFQPPITKPYYNGINPYALGFSMMSDIRRICENPT+EDREWFPDI
Sbjct: 300 TDGFMMEFLHSHSNVVFQPPITKPYYNGINPYALGFSMMSDIRRICENPTDEDREWFPDI 359

Query: 361 AGRNWLDTLQYVMRNYKDESFIAQYLSPKLMRDMRMFAVLDDEARSEIEVSAIHNERGFQ 420
           AGRNWLDTLQYVMRNYKDESFIAQYLSPKLMRDMRMFAVLDDE+RSEIEVSAIHNERGFQ
Sbjct: 360 AGRNWLDTLQYVMRNYKDESFIAQYLSPKLMRDMRMFAVLDDESRSEIEVSAIHNERGFQ 419

Query: 421 YVRQALSRQYDINHREPNIQVWSVNTRGNRSLTLRHFRSDGRSLGDSTNEVLRHMARLWQ 480
           YVRQALSRQYDINHREPNIQVWSVNTRGNRSLTLRHFRSDGRSLGDSTNEVLRHMARLWQ
Sbjct: 420 YVRQALSRQYDINHREPNIQVWSVNTRGNRSLTLRHFRSDGRSLGDSTNEVLRHMARLWQ 479

Query: 481 FDVYLESVDDNGYIVQRYECVAENRYALRS 510
           FDVYLESVDDNGYIVQRYECVAENRYALRS
Sbjct: 480 FDVYLESVDDNGYIVQRYECVAENRYALRS 509


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,564,874
Number of extensions: 62532
Number of successful extensions: 148
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 421
Effective length of database: 1,198,455
Effective search space: 504549555
Effective search space used: 504549555
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 133 (55.8 bits)