BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0227.p (918 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312548|ref|YP_003776640.1| filamentous hemagglutinin outer... 440 e-124 gi|300310626|ref|YP_003774718.1| filamentous hemagglutinin prote... 310 5e-85 >gi|300312548|ref|YP_003776640.1| filamentous hemagglutinin outer membrane protein [Herbaspirillum seropedicae SmR1] Length = 2685 Score = 440 bits (1131), Expect = e-124, Method: Compositional matrix adjust. Identities = 308/629 (48%), Positives = 401/629 (63%), Gaps = 69/629 (10%) Query: 1 MARHPVQPLAFAVLVLAGAQLLTLPAAQAQIVADPSAPRSQQAVVVTTANGLPQVNITTP 60 MAR + + AVL+ GA + T+P A AQI+ADP+APR+QQ VVV TANG+PQVNI TP Sbjct: 46 MAR--LSWIGLAVLLATGALVTTMPRAYAQIIADPNAPRAQQPVVVNTANGIPQVNIQTP 103 Query: 61 SAAGVSRNTYSQFDVNKPGAILNNARNDVQTRLGGWIQRNPNLATGTAGVILNEVNSANP 120 SAAGVSRNTYSQFDVN+ GAILNN+R+DVQT+LGGW+QRNPNLA GTA VILNEVNS+NP Sbjct: 104 SAAGVSRNTYSQFDVNRAGAILNNSRSDVQTQLGGWVQRNPNLANGTARVILNEVNSSNP 163 Query: 121 SFLRGYVEVAGDRAQVIIANPSGVTCDGCGFINASRTTLTTGTAIMNNGNLDGFVVRRGT 180 S LRG+VEVAGDRAQVIIANPSGVTCDGCGFINASR+TLTTGT I+NNG+LDG++VR G Sbjct: 164 SMLRGFVEVAGDRAQVIIANPSGVTCDGCGFINASRSTLTTGTPIINNGSLDGYLVRGGV 223 Query: 181 VTVQGEGLDSSQSDYTHIIARAVRINAGLWSRDLRITTGANRVNADNQIVEKLDGEGDTP 240 V+++G GL+ SQS +T +IARA +INAG+WS++L++T G N+VNADN V + + P Sbjct: 224 VSIKGNGLNDSQSSFTDLIARAAKINAGIWSKELKVTVGTNQVNADNTTVTAVSADPAKP 283 Query: 241 SLSIDVAQLGGMYANKIVLVGTEAGVGVRNAGTIGAAAGEVRISAAGHIENTGKIQSTQT 300 IDVAQLGGMYANKIVLVGTE+GVGVRNAG IGAAAGE+ ++AAG IEN+G + +T + Sbjct: 284 QFGIDVAQLGGMYANKIVLVGTESGVGVRNAGAIGAAAGELTLTAAGRIENSGSLAATAS 343 Query: 301 ASIAATSLDNRGGKLQATSDLDVTLGSGALDNRAGLLDTSANLRLQA-AGIDNRDTGASD 359 + AT +GG + N + ++A ++LQA GI+N +T ++ Sbjct: 344 LGVRATG---QGGDIV---------------NSGSVASSAAAVKLQADGGINNSNTISAQ 385 Query: 360 QGLHGATISVQAQSLDNQRGSMLASQSQTLRTERSLDNSNGVISAAGDLSISGSNLVLTN 419 G +++ A SL N A+ + + T +++NS G + AAGD+SIS + Sbjct: 386 SG-----VTLTAASLQNSGAISAATGNVEVDTHGAVNNS-GKVQAAGDISISAT------ 433 Query: 420 TGGQIQTNAALQVQAASISNTGTSGASQGLLGKRLTLDADVIDNRRGKLRAEEALAIRAA 479 Q Q NA AA ISNTG A+ G LG L AD + + G + A+ +IRA Sbjct: 434 ---QPQGNA-----AADISNTGNIEAA-GQLG----LTADGMLSNDGSITAQ---SIRAG 477 Query: 480 TSVDNSAGAI--SASAGVTIQDRLDAPPARRLSVRNDGGLIETANALDIKAAGLSNTDTG 537 + G+I ++A T+Q L RLS +D L++ G + D Sbjct: 478 VQGLRNNGSIGTRSNAAFTLQQGLVQGANGRLSAVSD---------LNLTMQG--DYDNA 526 Query: 538 GTSQGLRATRISIDADRIDNTRGAILANDSTTVSASGSLDNSAGTVSAGGALRI-ADRNA 596 G Q A +++ A I N GA L T++A LDN AG +SA L I AD Sbjct: 527 GRVQ---ANTLTLSAANIGNRSGAALQAADITLTALNRLDN-AGEISANRQLNITADSIL 582 Query: 597 DSAS--GNGAVNNSRSLAITNTGGKLDAG 623 +SA+ G V N+R+L T L AG Sbjct: 583 NSATILGKDLVVNARTLENTGANALLGAG 611 >gi|300310626|ref|YP_003774718.1| filamentous hemagglutinin protein [Herbaspirillum seropedicae SmR1] Length = 2658 Score = 310 bits (793), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 215/511 (42%), Positives = 291/511 (56%), Gaps = 43/511 (8%) Query: 3 RHPVQPLAFAVLVLAGAQLLTLPAAQAQIVADPSAPRSQQAVVVTTANGLPQVNITTPSA 62 RH V A A L++ L +P QIVADP+A ++ VV TANG P V I TPSA Sbjct: 15 RHGVLRRAMAALMI---MLCVVPPGYPQIVADPNAGAGKRPVVDNTANGRPLVQIATPSA 71 Query: 63 AGVSRNTYSQFDVNKPGAILNNARNDVQTRLGGWIQRNPNLATGTAGVILNEVNSANPSF 122 AGVS N YSQF+V GAILNNAR+ V T+ GG++ NPNL G A VILNEV S +PS Sbjct: 72 AGVSHNQYSQFNVGPNGAILNNARDVVLTQQGGYVGANPNLQGGAARVILNEVTSTSPSQ 131 Query: 123 LRGYVEVAGDRAQVIIANPSGVTCDGCGFINASRTTLTTGTAIM-NNGNLDGFVVRRGTV 181 LRGY EVAG RA+VIIANP+G++CDGCGFIN SR LTTG + NG+L+ F V RG + Sbjct: 132 LRGYTEVAGQRAEVIIANPNGISCDGCGFINTSRGVLTTGVPLFGGNGSLEAFRVSRGAI 191 Query: 182 TVQGEGLDSSQSDYTHIIARAVRINAGLWSRDLRITTGANRVNADNQIVEKLDGEGDTPS 241 + GL+ + +D +IAR+V++N LW L + TGANRVN + + + GEG+ P+ Sbjct: 192 QIGSGGLNGANTDQLDLIARSVQVNGELWGNRLNLVTGANRVNYGDLGLSVIAGEGNAPT 251 Query: 242 LSIDVAQLGGMYANKIVLVGTEAGVGVRNAGTIGAAAGEVRISAAGHIENTGKIQSTQTA 301 + +DVA++GGMYA KI+LVGTE GVGVR+ GT+ A AG +S+ G I +GK ++ Sbjct: 252 IGVDVARMGGMYAQKIMLVGTENGVGVRSLGTLAAQAGSFTLSSQGQIALSGKTSASDDI 311 Query: 302 SIAATSLDNRGGKLQATSDLDVTLGSGALDNRAGLLDTSANLRLQAAGIDNRDTGASDQG 361 + + + G L A + L G ++N AG L NL + AA + R TG G Sbjct: 312 VLKSAVGTSNDGVLYAGR--NAQLQGGVIEN-AGTLSAQGNLDITAAQL--RSTGTLAAG 366 Query: 362 LHGATISVQAQSLD-NQRGSMLASQSQTLRTERSLDNSNGVISAAGDLSISGSNLVLTNT 420 + A QA +L G +LA+ GV A DL + G + L+++ Sbjct: 367 VDQAGNVAQAGNLTVTASGDVLAT---------------GVNRAGADLQLVGGKIDLSHS 411 Query: 421 GGQ------IQTNAALQVQAASISNTG----TSGASQGLLGKRLTLDADV-------IDN 463 Q + AL + A++ GA+ L G +LT AD + N Sbjct: 412 SSSAGRKLGAQASDALTLGGATVETLAGDLELGGATITLDGAKLTSSADARINAVAGLSN 471 Query: 464 RRGKLRAEEALAIRAATSVDNSAGAISASAG 494 R G++ + A+ + AA SVDNSAG ISA+ G Sbjct: 472 RGGEITSAGAMNVTAA-SVDNSAGMISAATG 501 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.312 0.129 0.356 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,811,120 Number of extensions: 124162 Number of successful extensions: 493 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 447 Number of HSP's successfully gapped: 5 Length of query: 918 Length of database: 1,619,870 Length adjustment: 94 Effective length of query: 824 Effective length of database: 1,174,780 Effective search space: 968018720 Effective search space used: 968018720 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 135 (56.6 bits)