BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0224.p
         (326 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310345|ref|YP_003774437.1| UDP-glucose 4-epimerase [Herbas...   459   e-130
gi|300312369|ref|YP_003776461.1| nucleoside-diphosphate-sugar ep...   139   3e-34

>gi|300310345|ref|YP_003774437.1| UDP-glucose 4-epimerase
           [Herbaspirillum seropedicae SmR1]
          Length = 320

 Score =  459 bits (1182), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 246/322 (76%), Positives = 264/322 (81%), Gaps = 6/322 (1%)

Query: 1   MRVLVTGAGGFIGGILLQPPPLQLLQQAGQVGQQRITRLAALDRKLPLLPESVECIEGEL 60
           M++LVTGAGGFIG  L+      LL+Q GQ G +RI+ LA LDR+L      +  IEG L
Sbjct: 1   MKILVTGAGGFIGATLVA-----LLRQRGQAGGRRISSLAVLDRQLGETAPDMVRIEGNL 55

Query: 61  QDAQVQSRLARFGADLCFHLAAVPGGAAEADPALSRRVNLDATLDLFNLLAEGRATGSAP 120
           QDAQVQ+++  FGADLCFHLAA+PGGAAEADPALSRRVNLDATLDLF LLA  R   + P
Sbjct: 56  QDAQVQAQIVAFGADLCFHLAALPGGAAEADPALSRRVNLDATLDLFELLAR-RDPATPP 114

Query: 121 PVVVYASTIAVYGTPLPDPVTPATPTRPALIYGAHKRACEILLADATRRGVLDGRSLRLP 180
           PVVVYASTIAVYG  LPDPVTPATP RPALIYGAHK ACEILLAD TRRG+LDGRSLRLP
Sbjct: 115 PVVVYASTIAVYGLDLPDPVTPATPPRPALIYGAHKLACEILLADYTRRGLLDGRSLRLP 174

Query: 181 GIVARPRAASGLVSAFMSELLHALAAGESVTLPVGPQATAWWMSAQRCAENLLHAAVMDP 240
           GIVARPRAASGLVSAFMSELLHALAAGE  T PVGPQATAWWMSAQRCAENLLHAA MDP
Sbjct: 175 GIVARPRAASGLVSAFMSELLHALAAGELFTCPVGPQATAWWMSAQRCAENLLHAASMDP 234

Query: 241 MLDTEGHMERTWALPVLRLSMQEVVATLSALYRVDGHALVRYAPQEPVEAVFGRYPVLDD 300
             D EG   R W LPVLRLS+ +VVATLSALY VDG ALVRYAPQ  VEAVFGRYP LDD
Sbjct: 235 TRDPEGAAARVWPLPVLRLSIAQVVATLSALYGVDGQALVRYAPQPQVEAVFGRYPRLDD 294

Query: 301 RIARRLGLRDDGSPAELVRRAL 322
           R AR+LGLRDDGS  E+V RAL
Sbjct: 295 RAARQLGLRDDGSVQEMVERAL 316


>gi|300312369|ref|YP_003776461.1| nucleoside-diphosphate-sugar
           epimerase [Herbaspirillum seropedicae SmR1]
          Length = 324

 Score =  139 bits (351), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 104/330 (31%), Positives = 167/330 (50%), Gaps = 26/330 (7%)

Query: 1   MRVLVTGAGGFIGGILLQPPPLQLLQQA---GQVGQ-QRITRLAALDRKLPLLPES---- 52
           M +++TG  GF+G  L +    QLLQ+    G+ GQ Q I R+  LD    + P      
Sbjct: 1   MHIVITGGAGFLGSRLAR----QLLQRGTLTGRDGQPQAIKRITLLD----VAPAQGFDD 52

Query: 53  --VECIEGELQDAQVQSRLARFGADLCFHLAAVPGGAAEADPALSRRVNLDATLDLFNLL 110
             +E + G++ DA V  R+        FHLAA+  G AEAD  L  ++N DAT     +L
Sbjct: 53  PRIEAVTGDIADAAVIERVITAETQSIFHLAAIVSGHAEADFDLGMKINFDATR---VIL 109

Query: 111 AEGRATGSAPPVVVYASTIAVYGTPLPDPVTPATPTRPALIYGAHKRACEILLADATRRG 170
              RA GS P VV + S++AV+G  LP  V   T   P   YGA K   E+L+ D +R+G
Sbjct: 110 ERARALGSKPRVV-FTSSVAVFGGELPAVVPDNTLLMPQSSYGAQKVMGELLVQDYSRKG 168

Query: 171 VLDGRSLRLPGIVARPRAASGLVSAFMSELLHALAAGESVTLPVGPQATAWWMSAQRCAE 230
            +DGR+LR+P I  RP A +   S+F S ++     G+    PV P    W MS ++   
Sbjct: 169 FIDGRALRMPTISVRPGAPNKAASSFASGIIREPLNGQPSVCPVTPDTRMWLMSPRQAIA 228

Query: 231 NLLHAAVMDPMLDTEGHMERTWALPVLRLSMQEVVATLSALYRVDGHALVRYAPQEPVEA 290
           NL+H   ++     +  + R  ++  L ++++E+V  L  +   +   L+ +   E ++ 
Sbjct: 229 NLIHGHEIN---GADLGLARFLSIDGLCVTVKEMVEALEQVAGKEVVQLIEWKEDEAIKR 285

Query: 291 VFGRYP-VLDDRIARRLGLRDDGSPAELVR 319
           +   +P   + + A+ LG   D + A+++R
Sbjct: 286 IVNSWPGAFEAKRAKALGFTADANFADIIR 315


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,023,597
Number of extensions: 45111
Number of successful extensions: 176
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 2
Length of query: 326
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 241
Effective length of database: 1,217,395
Effective search space: 293392195
Effective search space used: 293392195
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)