BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0219.p
         (315 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310340|ref|YP_003774432.1| FAD-dependent 2-polyprenyl-6-me...   590   e-170
gi|300310665|ref|YP_003774757.1| monooxygenase FAD-binding prote...    84   2e-17
gi|300311950|ref|YP_003776042.1| 2-polyprenyl-6-methoxyphenol hy...    60   3e-10

>gi|300310340|ref|YP_003774432.1| FAD-dependent
           2-polyprenyl-6-methoxyphenol hydroxylase [Herbaspirillum
           seropedicae SmR1]
          Length = 376

 Score =  590 bits (1522), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 287/315 (91%), Positives = 302/315 (95%)

Query: 1   VLDAFLREGAAGDGVRLCLPHGPQIAELPTPRLASPDVPGGGAILRPVLARILADATRAS 60
           VL+AFLREGAAGDGVRLCLPHGPQ+AELPTPRLASPDVPGGGAILRPVLARILADATRA+
Sbjct: 62  VLEAFLREGAAGDGVRLCLPHGPQVAELPTPRLASPDVPGGGAILRPVLARILADATRAA 121

Query: 61  GTDVRLGCTFTALREIGDEVEVDFTDGQTRRYDLVIGADGLYSKLRAHLFPHAPKPRYSG 120
           G DVRLGCTF+A+RE+G +VEVDFTDGQTRRYDLVIGADGLYSKLR HLFPHAPKPRYSG
Sbjct: 122 GADVRLGCTFSAVREVGHKVEVDFTDGQTRRYDLVIGADGLYSKLRMHLFPHAPKPRYSG 181

Query: 121 QAVWRAILPRPAEITTCTMWMGPQIKPGVNPVSKDEMYLFVTEPRPVNDHVDPATFVARL 180
           QAVWRA+LPRP EI TCTMWMGP+IKPGVNPVSKDEMYLFVTEPRPVN+HVDP TFV+ L
Sbjct: 182 QAVWRAVLPRPQEIVTCTMWMGPRIKPGVNPVSKDEMYLFVTEPRPVNEHVDPTTFVSHL 241

Query: 181 RGLLEDFSAPVLKTIRDQLDDNARIIFRPLEGLLLPRPWYQGRVVLIGDAVHATTPHLAS 240
           RGLLE+FSAPVLKTIR+QLDDNARIIFRPLEGLLLPRPWYQGRVVLIGDAVHATTPHLAS
Sbjct: 242 RGLLEEFSAPVLKTIREQLDDNARIIFRPLEGLLLPRPWYQGRVVLIGDAVHATTPHLAS 301

Query: 241 GACIGIEDALVLADELARNGNVALALSAFEERRWERCRMVVENSARLGEIEVGGGDKDEH 300
           GACIGIEDALVLADEL R+G V  AL+AFEERRWERCRMVVENSARLGEIEV GGDKDEH
Sbjct: 302 GACIGIEDALVLADELERHGTVPQALAAFEERRWERCRMVVENSARLGEIEVEGGDKDEH 361

Query: 301 SRIMRESHAALVQPI 315
           SRIMR SHAALVQPI
Sbjct: 362 SRIMRASHAALVQPI 376


>gi|300310665|ref|YP_003774757.1| monooxygenase FAD-binding protein
           [Herbaspirillum seropedicae SmR1]
          Length = 384

 Score = 83.6 bits (205), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 107/231 (46%), Gaps = 21/231 (9%)

Query: 64  VRLGCTFTALREIGDEVEVDFTDGQTRRYDLVIGADGLYSKLRAHLFPHAPKPRYSGQAV 123
           +  G   T + + GD V + F DG T   D+VIGADG+ S++R  L    P P+Y+G   
Sbjct: 124 LSFGKCLTKVEDRGDVVILSFADGTTEEADIVIGADGVNSRIREELLGVEP-PKYAGYLA 182

Query: 124 WRAILPRPA------EITTCTMWMGPQIKPGVNPVSK--DEMYLFVT----EPRPVNDHV 171
            RA+ P P           C  W        V  V+   +E+Y +VT    E   +ND  
Sbjct: 183 HRAVFPTPELKAGMLPFDACVKWWSDDRHMMVYFVTSKANELY-YVTGVPVEKWDLNDRW 241

Query: 172 DPATFVARLRGLLEDFSAPVLKTIRDQLDDNARIIFRPLEGLLLPRPWYQGRVVLIGDAV 231
            P++    +R     +  P ++ + D   +  +  +  LE   LP  W +GR+VL+GDA 
Sbjct: 242 LPSS-KEEMRETFHGWH-PTVQALVDATVEVTK--WSLLERDPLPL-WSRGRLVLLGDAC 296

Query: 232 HATTPHLASGACIGIEDALVLADELARNG--NVALALSAFEERRWERCRMV 280
           H   PH+A GA + IED  +LA      G  N A A + +E  R  R   V
Sbjct: 297 HPMKPHMAQGAAMAIEDGAMLARCFKEVGVSNYADAFALYEANRAARASKV 347


>gi|300311950|ref|YP_003776042.1| 2-polyprenyl-6-methoxyphenol
           hydroxylase [Herbaspirillum seropedicae SmR1]
          Length = 407

 Score = 59.7 bits (143), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 92/222 (41%), Gaps = 30/222 (13%)

Query: 65  RLGCTFTALREIGDEVEVDFTDGQTRRYDLVIGADGLYSKLRAHLFP------HAPKPRY 118
           R G T          V V  +DG     DL+I ADG++S LR   F       H    RY
Sbjct: 130 RFGVTVQEALNQASSVRVSLSDGSCHEADLLIAADGVHSSLRRRHFAADANCLHPLGYRY 189

Query: 119 SGQAVWRAILPRPAEITTCTMWMGPQIKPGVNPVSKDEMYLFVTEPRPVNDHV---DPAT 175
           +   V   +L            +G        P  + E Y  + + R    HV     A 
Sbjct: 190 ASYEVQDHLL------------LGQDFLSYAEPGIQTEYY-GLCDGRLAALHVWRSREAG 236

Query: 176 FV--ARLRGLLEDFSAPVLKTIRDQLD---DNARIIFRPLEGLLLPRPWYQGRVVLIGDA 230
           FV  A+   LL   +A     +R  L+   +   I+   L  + LP  W QGR++L+GDA
Sbjct: 237 FVPPAQRHSLLRTCTARSFTGVRATLEAVENPQEIVIDDLALVELP-SWRQGRILLLGDA 295

Query: 231 VHATTPHLASGACIGIEDALVLADELAR--NGNVALALSAFE 270
            H+ +     GA + +  A +LA+EL R   G VA + SA E
Sbjct: 296 AHSLSLISGQGAGVALASASILAEELERAAAGGVAPSSSALE 337


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.140    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,157,737
Number of extensions: 54232
Number of successful extensions: 150
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 3
Length of query: 315
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 230
Effective length of database: 1,217,395
Effective search space: 280000850
Effective search space used: 280000850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)