BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0217.p
         (123 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310339|ref|YP_003774431.1| Rieske (2Fe-2S) domain-containi...   193   3e-51
gi|300311213|ref|YP_003775305.1| nitrite reductase ferredoxin su...    59   1e-10

>gi|300310339|ref|YP_003774431.1| Rieske (2Fe-2S) domain-containing
           protein [Herbaspirillum seropedicae SmR1]
          Length = 112

 Score =  193 bits (491), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 94/114 (82%), Positives = 101/114 (88%), Gaps = 2/114 (1%)

Query: 1   MYLCHVTQLPEDGARGFDTAGAGQATIFLLRRGDQVRAWHDSCPHHGTPLPWRRDAYLDA 60
           MYLCH+TQLPE+GARGFDT  AGQATIF+LRRGDQVRAW DSCPHHGTPLPWRRDAY D 
Sbjct: 1   MYLCHITQLPENGARGFDTESAGQATIFVLRRGDQVRAWRDSCPHHGTPLPWRRDAYFDG 60

Query: 61  SGQHVVCAAHGALFDPLTGECTLGPCLGDSLTPVALRIDDDGGLHLATGEDDPL 114
           +GQH+VCAAHGALFDPLTG CTLGPC GD+LT V LRIDDDGGLH+  G  DPL
Sbjct: 61  TGQHLVCAAHGALFDPLTGVCTLGPCQGDTLTAVPLRIDDDGGLHVDAG--DPL 112


>gi|300311213|ref|YP_003775305.1| nitrite reductase ferredoxin
           subunit [Herbaspirillum seropedicae SmR1]
          Length = 124

 Score = 58.5 bits (140), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 56/104 (53%), Gaps = 3/104 (2%)

Query: 1   MYLCHVTQLPEDG-ARGFDTAGAG-QATIFLLRRGDQVRAWHDSCPHHGTPLPWRRDAYL 58
           + +C   +L E G  + F     G +A+ F++R G  V  + + C H    L W    + 
Sbjct: 7   ILICASAELVEGGLGKRFPVQVRGDEASGFVVRYGGVVYGYLNRCAHLPVELDWAEGEFF 66

Query: 59  DASGQHVVCAAHGALFDPLTGECTLGPCLGDSLTPVALRIDDDG 102
           ++SG +++CA HGA++ P TG+C  GPC G  L  + + ++ +G
Sbjct: 67  ESSGLYLMCATHGAVYAPDTGKCAGGPCTGAHLRKI-MTVEREG 109


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.141    0.468 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 470,435
Number of extensions: 20793
Number of successful extensions: 56
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 2
Length of query: 123
Length of database: 1,619,870
Length adjustment: 74
Effective length of query: 49
Effective length of database: 1,269,480
Effective search space: 62204520
Effective search space used: 62204520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)