BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0207.p (390 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310347|ref|YP_003774439.1| GGDEF domain transmembrane prot... 157 2e-39 gi|300311237|ref|YP_003775329.1| GGDEF domain-containing protein... 118 1e-27 gi|300313993|ref|YP_003778085.1| diguanylate cyclase/phosphodies... 115 5e-27 gi|300312078|ref|YP_003776170.1| hypothetical protein Hsero_2767... 113 3e-26 gi|300312320|ref|YP_003776412.1| response regulator protein [Her... 110 3e-25 >gi|300310347|ref|YP_003774439.1| GGDEF domain transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 334 Score = 157 bits (396), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 90/197 (45%), Positives = 129/197 (65%), Gaps = 6/197 (3%) Query: 191 VLIAERDPFIVQQVRVTARLTKFIRNMTEELEKTRAELSRMAFTDQLTNLPNRVKLNAVL 250 VL AE D F++ V +T R + + +E+ +L+ +A TD+LT L NR+KL+ VL Sbjct: 128 VLGAE-DFFVISHVVITGR-----KLAEQRVERLNEKLALLAVTDKLTGLANRMKLDEVL 181 Query: 251 SDCVNMANRYGTPFSIILSDVDRFKSINDNYGHLAGDSVLKCVAEILTSNTRSTDVAGRW 310 + +N A+RYG S+IL D+D FK +NDN+GH GD+VL +AEIL +N RS+D+AGRW Sbjct: 182 DNEINRADRYGKNLSLILLDIDHFKEVNDNFGHSTGDAVLVRIAEILRANVRSSDLAGRW 241 Query: 311 GGEEFLVITANTALANAVHLAEKVRMTLAQASLPNVRQITASFGVASYAVGETISALLDR 370 GGEEFL+I + +A +AEK+R+ + + V + T SFGVA+Y G + LL Sbjct: 242 GGEEFLLILPECDMEDAARMAEKLRLLIENYNFVPVGRRTCSFGVAAYQAGHDRTTLLTL 301 Query: 371 ADHALYAAKRSGRDRVQ 387 AD ALY AK +GR+RV+ Sbjct: 302 ADLALYRAKNTGRNRVE 318 >gi|300311237|ref|YP_003775329.1| GGDEF domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 585 Score = 118 bits (295), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 67/177 (37%), Positives = 102/177 (57%), Gaps = 6/177 (3%) Query: 216 NMTEELEKTRAELSRMAFTDQLTNLPNRVKLNAVLSDCVNMANRYGTPFSIILSDVDRFK 275 ++ E E +L + TD LT + NR + +A RYG +++L D+D FK Sbjct: 397 SLAREREALITQLQTSSNTDFLTGVLNRRAFFTHGQQQMTVAKRYGRELAVVLFDIDHFK 456 Query: 276 SINDNYGHLAGDSVLKCVAEILTSNTRSTDVAGRWGGEEFLVITANTALANAVHLAEKVR 335 IND+YGH AGD++L+ VA+ ++ R DV R+GGEEF+++ ++L A +EK+R Sbjct: 457 QINDSYGHQAGDAILRGVAQSVSQLLRKVDVLARYGGEEFIILLPESSLLQAAAASEKLR 516 Query: 336 MTLAQASLP-----NVRQITASFGVASYAVGETISALLDRADHALYAAKRSGRDRVQ 387 LA +R +TASFGVA+ G + L+ +AD ALY AK+ GR+RV+ Sbjct: 517 AALAAGEFEIDGGRRIR-VTASFGVAAENGGPGLEHLIKQADIALYRAKKLGRNRVE 572 >gi|300313993|ref|YP_003778085.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 573 Score = 115 bits (288), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 81/237 (34%), Positives = 121/237 (51%), Gaps = 28/237 (11%) Query: 157 TTQVAIHNSTLIAVTMREGNKVVSRPTQQQAATNVLIAERDPFIVQQVRVTARLTKFIRN 216 T +V H + IAV R+ N++ + Q + + +QVR+ R Sbjct: 348 TVRVEQHGNDEIAVLSRKFNEMAGKLQQNR-----------EVLEEQVRLRTR------- 389 Query: 217 MTEELEKTRAELSRMAFTDQLTNLPNRVKLNAVLSDCVNMANRYGTPFSIILSDVDRFKS 276 ELE+ +L ++ TD LT + NR + + L++ + A R G ++++ DVD FK Sbjct: 390 ---ELERANRKLEALSATDGLTGVANRRRFDEALANEMRRAVRSGQSLALLMLDVDYFKK 446 Query: 277 INDNYGHLAGDSVLKCVAEIL-TSNTRSTDVAGRWGGEEFLVITANTALANAVHLAEKVR 335 ND YGHLAGD L+ VA +L S+ R+TD+ R+GGEEF VI A A+ AE + Sbjct: 447 YNDRYGHLAGDECLRIVARVLQKSSRRATDLVARYGGEEFSVIIAECDTTQALQQAENIC 506 Query: 336 MTLAQASLPNVRQ----ITASFGVASYAVGETIS--ALLDRADHALYAAKRSGRDRV 386 + + LP+ I+AS GVA E + ++ AD ALY AK GR+RV Sbjct: 507 QAIFELKLPHADSPFGYISASIGVAVLLPDEHTAPEQMVRIADQALYHAKYQGRNRV 563 >gi|300312078|ref|YP_003776170.1| hypothetical protein Hsero_2767 [Herbaspirillum seropedicae SmR1] Length = 534 Score = 113 bits (282), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 66/169 (39%), Positives = 94/169 (55%), Gaps = 3/169 (1%) Query: 221 LEKTRAELSRMAFTDQLTNLPNRVKLNAVLSDCVNMANRYGTPFSIILSDVDRFKSINDN 280 LE+ ++ + DQLT NR ++ L + A R TP + L D+D FK IND Sbjct: 353 LEQQLLQMGELVREDQLTGSLNRRGMDESLDREITNALRRDTPLCVALLDLDDFKRINDT 412 Query: 281 YGHLAGDSVLKCVAEILTSNTRSTDVAGRWGGEEFLVITANTALANAVHLAEKVRMTLAQ 340 +GH GD VL + +++ R DV R+GGEEFLV+ TA +AV + +V+ L + Sbjct: 413 HGHATGDEVLVHMVQVIRETLRKLDVIARFGGEEFLVLMPETAPQDAVQIITRVQRELTK 472 Query: 341 ASLPNVRQ---ITASFGVASYAVGETISALLDRADHALYAAKRSGRDRV 386 + Q IT S GVA Y GE+ + LL RAD ALY AK +G++R+ Sbjct: 473 RIFMHESQRLLITFSAGVAVYHPGESQADLLKRADVALYKAKNAGKNRI 521 >gi|300312320|ref|YP_003776412.1| response regulator protein [Herbaspirillum seropedicae SmR1] Length = 341 Score = 110 bits (274), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 70/181 (38%), Positives = 101/181 (55%), Gaps = 8/181 (4%) Query: 214 IRNMTEELEKTRAELSRMAFTDQLTNLPNRVKLNAVLSDCVNMANRYGTPFSIILSDVDR 273 +R ++L+K+ EL R+ TD LT + NR + L A R G +++L DVD Sbjct: 156 LRESQQQLQKSNFELQRLTNTDGLTGIANRRYFDDYLGAEWRRARRDGLDLALLLIDVDF 215 Query: 274 FKSINDNYGHLAGDSVLKCVAEILTSNT-RSTDVAGRWGGEEFLVITANTALANAVHLAE 332 FK NDNYGH+AGD+VL+ VAE L S+ R D++ R+GGEEF +I T L A +A+ Sbjct: 216 FKLYNDNYGHVAGDAVLRQVAEALDSSIQRPADLSARFGGEEFAMILPRTGLDGAHAIAQ 275 Query: 333 KVRMTLAQASLPN-----VRQITASFGVASYAVGET--ISALLDRADHALYAAKRSGRDR 385 KV + +P+ +T S G A+ E + L++ AD LY AK+ GR+R Sbjct: 276 KVCHLVESLQVPHEGSSVSAWLTVSVGAATLVPQEQQELRELIEAADRRLYLAKQQGRNR 335 Query: 386 V 386 V Sbjct: 336 V 336 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.133 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,063,951 Number of extensions: 38181 Number of successful extensions: 200 Number of sequences better than 1.0e-08: 39 Number of HSP's gapped: 152 Number of HSP's successfully gapped: 39 Length of query: 390 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 303 Effective length of database: 1,207,925 Effective search space: 366001275 Effective search space used: 366001275 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)