BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0206.p (298 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313922|ref|YP_003778014.1| LysR family transcription regul... 225 3e-60 gi|300309660|ref|YP_003773752.1| LysR family transcription regul... 192 4e-50 gi|300309921|ref|YP_003774013.1| LysR family transcription regul... 171 6e-44 gi|300311458|ref|YP_003775550.1| LysR family transcription regul... 160 1e-40 gi|300312196|ref|YP_003776288.1| LysR family transcription regul... 157 1e-39 >gi|300313922|ref|YP_003778014.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 308 Score = 225 bits (574), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 126/305 (41%), Positives = 186/305 (60%), Gaps = 14/305 (4%) Query: 1 MDRLTATKVFVTVVDQGSLTLAAECLEMNAAMVSRYLAALESWMKVRLLHRTTRKISLTE 60 MDRL A +VFVTVVD GSL+ AAE L+++ +VSRY+A LE W+ RLLHRTTR++SLT Sbjct: 1 MDRLMAMQVFVTVVDSGSLSAAAEQLDLSRPVVSRYVAELEDWVGARLLHRTTRRLSLTP 60 Query: 61 AGDAALESCRQLLRISENLEANTLGLSQSPRGRLRIATPHLFGKLILTPALVGFQKRFPE 120 AG+ L CRQ+L SE++ ++PRG LRI F + L A+V + +R+P Sbjct: 61 AGNELLPRCRQMLEYSEDMRHALDAPDETPRGLLRITASTSFAQTQLIQAVVEYGRRYPG 120 Query: 121 IELSIVASNITLDMTQDRLDLSICISDLLEPNLIAKRLGTWPLMICATPAYLREHGTPSS 180 + + ++A + T+++ ++R+DL+I +++ LEPNLIA+ LG +ICATP YL HG P Sbjct: 121 VAVDLLALDRTVNLVEERIDLAIRMTNRLEPNLIARPLGVCRSIICATPDYLARHGLPRK 180 Query: 181 VEDLHQHAFITHS-------QLTVGKRRLRLNGRELDFPLRQ------RFTANEAGIILA 227 VEDL H +THS Q K++ R +GR Q +ANE ++L Sbjct: 181 VEDLALHNCLTHSYVGRSLWQFDPKKKKAR-SGRGASAAKPQSVAVGGSISANEVTVLLQ 239 Query: 228 AVLEGAGLAILPEAYIQRELAEGRLVRVLPGVAPDPLEFHAVYLSRQHQPMALKELIQYL 287 AVL G G+ +P + +A G+LV++LP P L + VY SR+H P L+ ++ +L Sbjct: 240 AVLAGVGIGHMPAYTVAPLVASGQLVQLLPDYEPLQLGMYGVYASRKHMPATLRTMLDFL 299 Query: 288 SEHFA 292 ++ FA Sbjct: 300 AQRFA 304 >gi|300309660|ref|YP_003773752.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 337 Score = 192 bits (487), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 104/295 (35%), Positives = 162/295 (54%), Gaps = 3/295 (1%) Query: 1 MDRLTATKVFVTVVDQGSLTLAAECLEMNAAMVSRYLAALESWMKVRLLHRTTRKISLTE 60 MDR A +VF VVD S T AA+ L + V+ + LES ++VRLL+RTTR+ISLT Sbjct: 1 MDRFQAMQVFTAVVDANSFTRAADNLNLPRTTVTTLVQGLESMLQVRLLNRTTRRISLTP 60 Query: 61 AGDAALESCRQLLRISENLEANTLGLSQSPRGRLRIATPHLFGKLILTPALVGFQKRFPE 120 G A E C ++L + E + +++ P+GRLRI P G+L+L P L F R+P+ Sbjct: 61 DGAAYYERCVRILADLDETEQSFRNVTRGPQGRLRIDVPASVGRLMLLPNLCDFYTRYPD 120 Query: 121 IELSIVASNITLDMTQDRLDLSICISDLLEPNLIAKRLGTWPLMICATPAYLREHGTPSS 180 IEL + + +D+ Q+ +D I I +L + +++A+R+GT+ + CA PAYL HG P + Sbjct: 121 IELMMGMGDRPVDLVQEAVDCVIRIGELQDSSMVARRIGTFQTVTCAAPAYLERHGVPHT 180 Query: 181 VEDLHQHAFITHSQLTVGKR---RLRLNGRELDFPLRQRFTANEAGIILAAVLEGAGLAI 237 +EDL QH + + G+ + G + + + NEA + L+G G+ Sbjct: 181 IEDLQQHKAVHYFSSRTGRTIDWDFVVEGVTREVKMNGKLAVNEADAYVECALQGFGMVQ 240 Query: 238 LPEAYIQRELAEGRLVRVLPGVAPDPLEFHAVYLSRQHQPMALKELIQYLSEHFA 292 P + R + EGRLV VL P P+ VYL +H ++ + +++E FA Sbjct: 241 APLYMVTRHIDEGRLVEVLSQWKPAPMPISVVYLHNRHLSPKVRAFVDWVAELFA 295 >gi|300309921|ref|YP_003774013.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 299 Score = 171 bits (433), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 107/295 (36%), Positives = 156/295 (52%), Gaps = 3/295 (1%) Query: 1 MDRLTATKVFVTVVDQGSLTLAAECLEMNAAMVSRYLAALESWMKVRLLHRTTRKISLTE 60 M++L + F+ V D GS AAE L ++ A VSR + LE+ + RL+ RTTR++SLTE Sbjct: 1 MNKLREIECFIAVADLGSFVKAAEALGISKAAVSRTVLELEARLGSRLMQRTTRRLSLTE 60 Query: 61 AGDAALESCRQLLRISENLEANTLGLSQSPRGRLRIATPHLFGKLILTPALVGFQKRFPE 120 AG LE C+Q++ E + S P G LRI P FG L L P F +R PE Sbjct: 61 AGALYLERCKQIVAALEEADDLLSSGSAKPTGLLRINAPLTFGVLHLAPLWPMFLERHPE 120 Query: 121 IELSIVASNITLDMTQDRLDLSICISDLLEPNLIAKRLGTWPLMICATPAYLREHGTPSS 180 I L I S+ +D+ + D++I I+ L + L+ ++L + L +CA+PAYL HGTP+ Sbjct: 121 ISLDITLSDRIVDIIDEGYDMAIRIARLSDSTLVHRKLTSTSLHVCASPAYLDAHGTPAH 180 Query: 181 VEDLHQHAFITHSQLTVGKRRLRLNGRELDFPLR--QRFTANEAGIILAAVLEGAGLAIL 238 +L QH I++S K + NG E +R R N + A L G G+ Sbjct: 181 PHELAQHQTISYS-YNQSKDEWQFNGPEGPVSVRVSSRLHVNNGDSCVQAALGGIGITRQ 239 Query: 239 PEAYIQRELAEGRLVRVLPGVAPDPLEFHAVYLSRQHQPMALKELIQYLSEHFAH 293 P I + L G+LV +L L +AVY SR H P ++ ++ +L+E FA Sbjct: 240 PTFMIDQYLRSGQLVSILGDYGAPELGIYAVYPSRAHLPAKMRAMLDFLTEAFAQ 294 >gi|300311458|ref|YP_003775550.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 303 Score = 160 bits (404), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 95/295 (32%), Positives = 159/295 (53%), Gaps = 2/295 (0%) Query: 1 MDRLTATKVFVTVVDQGSLTLAAECLEMNAAMVSRYLAALESWMKVRLLHRTTRKISLTE 60 MDRL + +VF VV+QGS AAE L+++ A+ +R++A LE+ + RLL+R+TR++SLTE Sbjct: 1 MDRLQSMRVFAKVVEQGSFVRAAELLDISNAVATRFIADLEAHLGTRLLNRSTRRLSLTE 60 Query: 61 AGDAALESCRQLLRISENLEANTLGLSQSPRGRLRIATPHLFGKLILTPALVGFQKRFPE 120 AG A LE R +L ++ EA ++ P G L I FG+ L L + + +PE Sbjct: 61 AGQAYLERVRMILAEVDDAEALVSLETKRPAGTLAIYCNAGFGQSQLGEMLSAYSQAYPE 120 Query: 121 IELSIVASNITLDMTQDRLDLSICIS-DLLEPNLIAKRLGTWPLMICATPAYLREHGTPS 179 + L I S ++D+ ++ +D+ S + ++I ++LG +++C +PAY+ G P Sbjct: 121 VALDISLSERSIDLVEEGIDIGFFSSMQKFDASMIVRQLGVARVILCTSPAYIARQGAPE 180 Query: 180 SVEDLHQHAFITHSQLTVGKR-RLRLNGRELDFPLRQRFTANEAGIILAAVLEGAGLAIL 238 EDL +H + S + + NG LD P+ + +N ++ L G G+ + Sbjct: 181 QPEDLSRHNCLNFSHEYLRHHWHVNTNGGVLDVPIVSKVVSNSGVLLRDLALAGMGIVLR 240 Query: 239 PEAYIQRELAEGRLVRVLPGVAPDPLEFHAVYLSRQHQPMALKELIQYLSEHFAH 293 P + +L GRLV+VLPG + VY SR+ ++ +++S F H Sbjct: 241 PSYSLGDDLRSGRLVQVLPGFDMGQVIMSMVYPSRRLLSAKVRSFAEFISARFPH 295 >gi|300312196|ref|YP_003776288.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 308 Score = 157 bits (396), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 93/294 (31%), Positives = 152/294 (51%), Gaps = 3/294 (1%) Query: 1 MDRLTATKVFVTVVDQGSLTLAAECLEMNAAMVSRYLAALESWMKVRLLHRTTRKISLTE 60 MD+L A + FV VV+ GS A + + VSR ++ LE ++ +RLLHRTTR++SLT+ Sbjct: 1 MDKLQAMQTFVAVVESGSFVAAVDVTGQSKPAVSRQVSELEQFLGIRLLHRTTRRLSLTD 60 Query: 61 AGDAALESCRQLLRISENLEANTLGLSQSPRGRLRIATPHLFGKLILTPALVGFQKRFPE 120 G C++LL +++E+ S GRLRI P FG L P F ++ P Sbjct: 61 EGRVYFARCKELLETIQDVESEVGLNSDQACGRLRIGAPQDFGVEQLAPLWGKFTEQHPL 120 Query: 121 IELSIVASNITLDMTQDRLDLSICISDLLEPNLIAKRLGTWPLMICATPAYLREHGTPSS 180 I L+I S+ T+D+ ++ D++I IS L + ++A+ L ++ CA P +L HGTP + Sbjct: 121 ITLNITLSDRTIDLLEEGFDMAIRISALGDSRMVARPLAPVRMIACAAPEFLARHGTPGT 180 Query: 181 VEDLHQHAFITHSQLTVGKRR--LRLNGRELDFPLRQRFTANEAGIILAAVLEGAGLAIL 238 +L + FI++S G ++G +R N A + G G+AI Sbjct: 181 PAELRDYPFISYSYRAGGDDWSFRHVHGDTCQVRVRSTVYVNNGATCRAMAIAGQGIAIQ 240 Query: 239 PEAYIQRELAEGRLVRVLPGVAP-DPLEFHAVYLSRQHQPMALKELIQYLSEHF 291 P+ + + G+LV + G + + L H +Y +R H P ++ + +L E F Sbjct: 241 PDFIVNAAIQAGQLVELFEGWSTGEQLVVHTLYPTRTHLPPKVQRMRDFLIEQF 294 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.136 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 910,656 Number of extensions: 37789 Number of successful extensions: 276 Number of sequences better than 1.0e-08: 53 Number of HSP's gapped: 217 Number of HSP's successfully gapped: 53 Length of query: 298 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 213 Effective length of database: 1,217,395 Effective search space: 259305135 Effective search space used: 259305135 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)