BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0205.p (193 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312531|ref|YP_003776623.1| methyl-accepting chemotaxis tra... 284 3e-78 gi|300313067|ref|YP_003777159.1| methyl-accepting chemotaxis tra... 144 4e-36 gi|300311479|ref|YP_003775571.1| methyl-accepting chemotaxis tra... 118 4e-28 gi|300311282|ref|YP_003775374.1| transmembrane sensor histidine ... 74 7e-15 >gi|300312531|ref|YP_003776623.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 609 Score = 284 bits (727), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 134/191 (70%), Positives = 163/191 (85%) Query: 1 MVKAYAAQAESGAISKEEAQARARAALKSIRYGVGGYFAVANSSQVILIHPIKPELEGKD 60 +VK Y A A+SGA+SKE+AQ A+ A+KS+RYG GYF+++ S Q+I++HPIK EL+GKD Sbjct: 54 LVKGYGALADSGALSKEDAQKLAKQAIKSLRYGTDGYFSISTSGQIIVMHPIKTELDGKD 113 Query: 61 MTNVKDPVGYSLFIEITKAAGKPDGDFVNYMWPKVGVADPVPKTTFVIAYKPWDWNLTTG 120 ++N KDP G +LF+EITKA KP+G FV+Y+WPKVG A+PVPKT+FVIAYKPWDWNLTTG Sbjct: 114 LSNFKDPAGNNLFVEITKAGSKPEGGFVHYLWPKVGAAEPVPKTSFVIAYKPWDWNLTTG 173 Query: 121 AYLDDINAAFIRTLTQMAILFIVVAVALVALLIVINRSILRTIGGDPATAAELANRIAHG 180 AY+DDINAAF+RTL QMA+LF V+ ALVAL+IVIN ILRTIGGDPA AAE+ANRIA G Sbjct: 174 AYMDDINAAFLRTLWQMALLFAAVSAALVALVIVINHGILRTIGGDPAQAAEVANRIAQG 233 Query: 181 DLTPNIEIRPG 191 DLTPNIE PG Sbjct: 234 DLTPNIETAPG 244 >gi|300313067|ref|YP_003777159.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 532 Score = 144 bits (363), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 74/192 (38%), Positives = 112/192 (58%), Gaps = 3/192 (1%) Query: 2 VKAYAAQAESGAISKEEAQARARAALKSIRYGVGGYFAVANSSQVILIHPIKPELEGKDM 61 + YA G +S+E+AQ A A ++ RY GY + +++ VI++HPI +L+G++M Sbjct: 55 IAGYAKLESDGKLSREDAQKAAIARIRDQRYTGDGYVTLVDANSVIVMHPINSKLDGRNM 114 Query: 62 TNVKDPVGYSLF--IEITKAAGKPDGDFVNYMWPKVGVADPVPKTTFVIAYKPWDWNLTT 119 + KD G L+ I T ++G G ++ Y WP+ G P PK FV +KPW+W+L Sbjct: 115 LDFKDAKGNELYKMIAATGSSGAGKG-YLEYWWPRPGSDQPSPKMGFVKRFKPWNWDLIC 173 Query: 120 GAYLDDINAAFIRTLTQMAILFIVVAVALVALLIVINRSILRTIGGDPATAAELANRIAH 179 Y DDI A F R L Q ++ I + V L + +++R+I R+IGG+P AAE+A +IA Sbjct: 174 SVYSDDIQADFRRALIQAVVVLIGLGVLLSLIAGMVSRNIFRSIGGEPGEAAEMARKIAA 233 Query: 180 GDLTPNIEIRPG 191 GDLT I G Sbjct: 234 GDLTGVIHTTQG 245 >gi|300311479|ref|YP_003775571.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 603 Score = 118 bits (295), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 67/195 (34%), Positives = 112/195 (57%), Gaps = 2/195 (1%) Query: 1 MVKAYAAQAESGAISKEEAQARARAALKSIRYGVGGYFAVANSSQVILIHPIKPELEGKD 60 +VK+Y A +G +SKEEAQ A + ++RY Y + +S V+L+ P + GK+ Sbjct: 52 VVKSYVADVAAGRVSKEEAQKNALERIAAMRYDGDNYLFIFDSRPVVLMLPSNKAMVGKN 111 Query: 61 MTNVKDPVGYSLFIEITKAAGKPDGDFVNYM--WPKVGVADPVPKTTFVIAYKPWDWNLT 118 + + KD G + ++E+ K + FV YM P ++ PK ++V+ + WDW + Sbjct: 112 VADRKDSEGKAYYVEMMKVGQEKQHGFVQYMGRLPGTDDSNRTPKMSYVVHNQDWDWFIV 171 Query: 119 TGAYLDDINAAFIRTLTQMAILFIVVAVALVALLIVINRSILRTIGGDPATAAELANRIA 178 TG +L D+ A F L ++ + +VV V + +++ I R I ++GG+PA A ++A RIA Sbjct: 172 TGVFLSDVQAQFRADLFRLLGILLVVGVVVSVMMLAIIRRITGSLGGEPAYAVDIATRIA 231 Query: 179 HGDLTPNIEIRPGLT 193 +GDLT ++ RPG T Sbjct: 232 NGDLTVQVQTRPGDT 246 >gi|300311282|ref|YP_003775374.1| transmembrane sensor histidine kinase transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 464 Score = 73.9 bits (180), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 41/115 (35%), Positives = 58/115 (50%), Gaps = 5/115 (4%) Query: 16 KEEAQARARAALKSIRYGVGGYFAVANSSQVILIHPIKPELEGKDMTNVKDPVGYSLFIE 75 KEEA R L + +G GYF V + + ++HP +PEL G +M N +D G S I+ Sbjct: 78 KEEA----RHLLADLEFGDDGYFFVYDDTGRSIMHPRQPELVGSEMWNWRDASG-SFTIQ 132 Query: 76 ITKAAGKPDGDFVNYMWPKVGVADPVPKTTFVIAYKPWDWNLTTGAYLDDINAAF 130 + G + Y+W K PK +VI+ W W + TG YLDD+ AA Sbjct: 133 HLIERARQGGGYERYLWRKPSSKTVAPKLGYVISLPRWGWVIGTGIYLDDVEAAL 187 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.136 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 533,034 Number of extensions: 18933 Number of successful extensions: 99 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 96 Number of HSP's successfully gapped: 5 Length of query: 193 Length of database: 1,619,870 Length adjustment: 80 Effective length of query: 113 Effective length of database: 1,241,070 Effective search space: 140240910 Effective search space used: 140240910 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)