BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0204.p (348 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312531|ref|YP_003776623.1| methyl-accepting chemotaxis tra... 405 e-114 gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis tra... 346 2e-96 gi|300312458|ref|YP_003776550.1| methyl-accepting chemotaxis sen... 343 1e-95 gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis pro... 337 1e-93 gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra... 336 1e-93 >gi|300312531|ref|YP_003776623.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 609 Score = 405 bits (1040), Expect = e-114, Method: Compositional matrix adjust. Identities = 230/262 (87%), Positives = 246/262 (93%) Query: 1 MRDSLLGTISNIKTSAESIATASKQIASGNLDLSGRTEQQAGSLEETASAMEELTSTVKQ 60 MRDSLL TI+NIK SA +IA+AS++IASGNLDLSGRTEQQAGS+EETASAMEELT+TVKQ Sbjct: 256 MRDSLLSTITNIKASAGTIASASQEIASGNLDLSGRTEQQAGSIEETASAMEELTATVKQ 315 Query: 61 NADNARQASQLAESASTVAIQGGGVVSQVVQTMERITDSSRKITDIIGVIDGIAFQTNIL 120 NADNARQA+QLAESAS VAIQGG VVSQVVQTME ITDSSRKI DIIGVIDGIAFQTNIL Sbjct: 316 NADNARQANQLAESASEVAIQGGSVVSQVVQTMEGITDSSRKIADIIGVIDGIAFQTNIL 375 Query: 121 ALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKMLIDDSVEKIDTGSRLVEEA 180 ALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA+AAKEIK LIDDSV K+DTGS+LVE+A Sbjct: 376 ALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKTLIDDSVAKVDTGSKLVEQA 435 Query: 181 GTTMTEVVASVRRVTDIVGEISAASQEQSAGIAEVGRAVMHMDEGTQQNAALVEEAAAAA 240 G TMTEVVASVRRVTDIVGEIS+ASQEQSAGIAEVGRA+ MDEGTQQNAALVE+AAAAA Sbjct: 436 GATMTEVVASVRRVTDIVGEISSASQEQSAGIAEVGRAITQMDEGTQQNAALVEQAAAAA 495 Query: 241 QSLQDQATTLAGLVARFRIDAS 262 QSLQDQA TLAGLV RF +D S Sbjct: 496 QSLQDQAATLAGLVGRFHVDGS 517 >gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 346 bits (887), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 195/260 (75%), Positives = 220/260 (84%) Query: 1 MRDSLLGTISNIKTSAESIATASKQIASGNLDLSGRTEQQAGSLEETASAMEELTSTVKQ 60 M +SL +S ++ ++I TAS +IA GNLDLS RTEQQAGSLEETASAMEELTSTV Q Sbjct: 256 MNESLRDIVSEVRQGTDTITTASHEIARGNLDLSNRTEQQAGSLEETASAMEELTSTVTQ 315 Query: 61 NADNARQASQLAESASTVAIQGGGVVSQVVQTMERITDSSRKITDIIGVIDGIAFQTNIL 120 NADNARQA+QLA +AS +A QGG VV QVVQTME IT+SSR+I DII VIDGIAFQTNIL Sbjct: 316 NADNARQANQLAATASDIASQGGEVVGQVVQTMEGITESSRRIADIISVIDGIAFQTNIL 375 Query: 121 ALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKMLIDDSVEKIDTGSRLVEEA 180 ALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEIK LIDDSV+K+ GS LVE A Sbjct: 376 ALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIDDSVQKVSAGSALVERA 435 Query: 181 GTTMTEVVASVRRVTDIVGEISAASQEQSAGIAEVGRAVMHMDEGTQQNAALVEEAAAAA 240 G+TMTEVVASVRRVTD+V EISAA+QEQS GI EV A+ MDE TQQNAALVE+AAAAA Sbjct: 436 GSTMTEVVASVRRVTDVVAEISAATQEQSGGINEVNLAITQMDETTQQNAALVEQAAAAA 495 Query: 241 QSLQDQATTLAGLVARFRID 260 SL+ QA+ LA +V +F++D Sbjct: 496 DSLKGQASNLAAVVGKFKLD 515 >gi|300312458|ref|YP_003776550.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 684 Score = 343 bits (881), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 199/260 (76%), Positives = 226/260 (86%) Query: 3 DSLLGTISNIKTSAESIATASKQIASGNLDLSGRTEQQAGSLEETASAMEELTSTVKQNA 62 D + T+ +I+ ++ES+ +S +IASGN+DLS RTEQQAGSLEETASAMEELTSTVKQNA Sbjct: 337 DKISRTLLDIRRASESVKVSSSEIASGNMDLSARTEQQAGSLEETASAMEELTSTVKQNA 396 Query: 63 DNARQASQLAESASTVAIQGGGVVSQVVQTMERITDSSRKITDIIGVIDGIAFQTNILAL 122 DNARQA+QLA SAS VA+ GG VV QVV TM I +SSRKI DII VIDGIAFQTNILAL Sbjct: 397 DNARQANQLAVSASDVAVHGGQVVGQVVATMSSINESSRKIVDIISVIDGIAFQTNILAL 456 Query: 123 NAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKMLIDDSVEKIDTGSRLVEEAGT 182 NAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEIK LIDDSV+K++TGS+LV +AG+ Sbjct: 457 NAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEIKGLIDDSVQKVETGSQLVAQAGS 516 Query: 183 TMTEVVASVRRVTDIVGEISAASQEQSAGIAEVGRAVMHMDEGTQQNAALVEEAAAAAQS 242 TM EVV+SVRRVTDIVGEISAASQEQS+GI EVG AV MDE TQQNAALVE+AAAAA+S Sbjct: 517 TMEEVVSSVRRVTDIVGEISAASQEQSSGITEVGNAVNQMDEATQQNAALVEQAAAAAKS 576 Query: 243 LQDQATTLAGLVARFRIDAS 262 LQ+QA LA +VA F++D S Sbjct: 577 LQEQAAHLAAVVAGFKLDES 596 >gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 516 Score = 337 bits (863), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 176/229 (76%), Positives = 197/229 (86%) Query: 1 MRDSLLGTISNIKTSAESIATASKQIASGNLDLSGRTEQQAGSLEETASAMEELTSTVKQ 60 M DSL + ++T ++I TAS++IA+GNLDLS RTE+QAGSLEETASAMEELT+TVKQ Sbjct: 256 MNDSLQQIVGEVRTGTDTITTASQEIATGNLDLSSRTEEQAGSLEETASAMEELTATVKQ 315 Query: 61 NADNARQASQLAESASTVAIQGGGVVSQVVQTMERITDSSRKITDIIGVIDGIAFQTNIL 120 NADNARQA+QLA SAS +A QGG VV QVVQTME IT+SS +I DII VIDGIAFQTNIL Sbjct: 316 NADNARQANQLAASASDIATQGGAVVGQVVQTMEGITESSNRIADIISVIDGIAFQTNIL 375 Query: 121 ALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKMLIDDSVEKIDTGSRLVEEA 180 ALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA+AAKEIK LIDDSVEK+ GS+LVE A Sbjct: 376 ALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDDSVEKVGAGSQLVERA 435 Query: 181 GTTMTEVVASVRRVTDIVGEISAASQEQSAGIAEVGRAVMHMDEGTQQN 229 G TM+EVVASVRRVTD+V EISAAS EQS GI E+ RA+ MDE TQQN Sbjct: 436 GATMSEVVASVRRVTDVVAEISAASNEQSTGIEEINRAITQMDEVTQQN 484 >gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 336 bits (862), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 189/263 (71%), Positives = 221/263 (84%) Query: 1 MRDSLLGTISNIKTSAESIATASKQIASGNLDLSGRTEQQAGSLEETASAMEELTSTVKQ 60 M D+L+ +S ++ ESI TAS +IASGNLDLS RTEQQAGSLEETASAMEE+TSTV+Q Sbjct: 258 MNDNLIEIVSGVRRGTESITTASGEIASGNLDLSARTEQQAGSLEETASAMEEMTSTVRQ 317 Query: 61 NADNARQASQLAESASTVAIQGGGVVSQVVQTMERITDSSRKITDIIGVIDGIAFQTNIL 120 NADNARQA+Q+A SAS +A+QGG +V +VV TM+ I SSRKI DIIGVIDGIAFQTNIL Sbjct: 318 NADNARQANQMAVSASEIALQGGQIVGRVVHTMDEINQSSRKIVDIIGVIDGIAFQTNIL 377 Query: 121 ALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKMLIDDSVEKIDTGSRLVEEA 180 ALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSAAAAKEIK LI DSV K++ GS LV +A Sbjct: 378 ALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALIADSVGKVEGGSALVAQA 437 Query: 181 GTTMTEVVASVRRVTDIVGEISAASQEQSAGIAEVGRAVMHMDEGTQQNAALVEEAAAAA 240 G TM +VV+SVR VTDIV EISAAS EQS+GI E+ RAV MDEGTQQNAALVE+AAAAA Sbjct: 438 GATMEQVVSSVRSVTDIVAEISAASAEQSSGIEEINRAVTQMDEGTQQNAALVEQAAAAA 497 Query: 241 QSLQDQATTLAGLVARFRIDASA 263 +S+Q+QA L ++ F+++ A Sbjct: 498 KSMQEQAVRLTQSISIFKLEQGA 520 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.310 0.121 0.315 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 696,775 Number of extensions: 19445 Number of successful extensions: 439 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 216 Number of HSP's successfully gapped: 72 Length of query: 348 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 262 Effective length of database: 1,212,660 Effective search space: 317716920 Effective search space used: 317716920 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 131 (55.1 bits)