BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0203.p (545 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313014|ref|YP_003777106.1| methyl-accepting chemotaxis tra... 724 0.0 gi|300312783|ref|YP_003776875.1| methyl-accepting chemotaxis tra... 700 0.0 gi|300311037|ref|YP_003775129.1| methyl-accepting chemotaxis tra... 558 e-160 gi|300313891|ref|YP_003777983.1| methyl-accepting chemotaxis I p... 527 e-151 gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis pro... 384 e-108 >gi|300313014|ref|YP_003777106.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 553 Score = 724 bits (1868), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/524 (75%), Positives = 451/524 (86%), Gaps = 3/524 (0%) Query: 12 NMKFFRELKIGTRLSLAFALSLALTVLLAAISLSSIRSLTVSIKAADAVQNQRLLPLFLA 71 +M F+ +KIGT+LSL FAL L LT++LA ISL SI LT SIKAAD VQ +RLLPL+LA Sbjct: 8 SMSGFKNMKIGTKLSLGFALLLTLTIILAGISLFSINRLTGSIKAADDVQVERLLPLYLA 67 Query: 72 REALDQTGIAARNAYVFKSDADAQKELLIVDEQRQLYLKALRDMEPHFAGNPDFEQMRKG 131 REALDQTG+AARNAYVF+++ADAQKEL IVDEQ+Q+YLKAL+DMEPHF G+ F+++R G Sbjct: 68 REALDQTGLAARNAYVFRTEADAQKELAIVDEQKQIYLKALKDMEPHFVGHKGFDKVRTG 127 Query: 132 LLKMAEELKRPRIYRESGRSEEFRDFLVYECSPLRRKIVQDINKIIDEVGAENLTAHDAT 191 LL+MAEELKRPRIYRESG+ EEFRDFLV ECSPLRR+IV DINK+I+E A+N+ AH T Sbjct: 128 LLQMAEELKRPRIYRESGKMEEFRDFLVNECSPLRRQIVLDINKVIEEADADNIKAHQTT 187 Query: 192 VSTATHAAIVVGVLTSVVALISVIVAFAMTRSILQQLGGEPAYAAAIAQKIAAGDLTAIV 251 V A A+ +V VLT +VA+IS +VAF +TRS+L+QLGGEPAYAA IAQ+IA+GDLTA V Sbjct: 188 VDMAAMASSLVAVLTGIVAVISALVAFVITRSLLKQLGGEPAYAADIAQQIASGDLTADV 247 Query: 252 ETKSGDTSSLLYAIKKMRDGLVDIVSKVREGTYAIEQASAEIATGNHDLSSRTEQQAGVL 311 + K GDT+SLL+AIKKMRD L IV KVREGT+AIEQASAEIATGN DLSSRTEQQAG L Sbjct: 248 DAKPGDTTSLLFAIKKMRDNLAAIVGKVREGTHAIEQASAEIATGNMDLSSRTEQQAGAL 307 Query: 312 EAAASSMEQLMATVKQNAENAREASELAVSASHVAGQGGVVVAEVVSTMEGINASSRKIV 371 E AS+ME+LM+TVKQNA+NAR+AS+LAVSAS VA QGG VV +VVSTMEGINASSRKIV Sbjct: 308 EETASAMEELMSTVKQNADNARQASQLAVSASDVASQGGQVVGQVVSTMEGINASSRKIV 367 Query: 372 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEITGLIK 431 DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEIT LI Sbjct: 368 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEITDLIN 427 Query: 432 DSVAQIEQGSTLVGQAGATMEDVVASVQRVTSVMAEISNATQEQSQGIAQVNQAISRMEE 491 DSV QIEQGS+LVGQAGATME+VV SV+RVT V+AEIS+A+QEQS GIAQVN AI+ M+E Sbjct: 428 DSVGQIEQGSSLVGQAGATMENVVTSVKRVTDVVAEISHASQEQSHGIAQVNLAITHMDE 487 Query: 492 TTQQNSALVEEAASAAGSMSEQAGVLARLVSIFKM---EAPGTL 532 TQQNSALVEEAA+AA SM QA LA LVS FK+ APG + Sbjct: 488 ATQQNSALVEEAAAAANSMKTQAEQLAGLVSTFKLAHSPAPGPV 531 >gi|300312783|ref|YP_003776875.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 700 bits (1807), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/514 (71%), Positives = 439/514 (85%) Query: 15 FFRELKIGTRLSLAFALSLALTVLLAAISLSSIRSLTVSIKAADAVQNQRLLPLFLAREA 74 F+ +KIGT+L+L F + LT+L++ ISLSSIR+LT SIKA AVQ+Q+L PL+ AREA Sbjct: 1 MFKHMKIGTKLALGFGALVVLTILVSGISLSSIRALTSSIKAVLAVQDQKLAPLYAAREA 60 Query: 75 LDQTGIAARNAYVFKSDADAQKELLIVDEQRQLYLKALRDMEPHFAGNPDFEQMRKGLLK 134 LDQTGIAARNAYVF+SDADAQKEL IVDEQ+QLYLKA++D+ P FAGN +FE++R G+L+ Sbjct: 61 LDQTGIAARNAYVFRSDADAQKELAIVDEQKQLYLKAIKDLGPLFAGNKEFEKVRSGMLQ 120 Query: 135 MAEELKRPRIYRESGRSEEFRDFLVYECSPLRRKIVQDINKIIDEVGAENLTAHDATVST 194 MAEELKRPR+YRESGRSEE+RDFLV ECSPLRR+IV DI ++ +V AEN A DAT Sbjct: 121 MAEELKRPRLYRESGRSEEYRDFLVNECSPLRRQIVSDIGTVLAQVEAENNRAQDATDKM 180 Query: 195 ATHAAIVVGVLTSVVALISVIVAFAMTRSILQQLGGEPAYAAAIAQKIAAGDLTAIVETK 254 A AA+ V VLT VV +IS+++A +TR +L+QLGGEP YAA IAQ+IA GDLTA V+TK Sbjct: 181 AQLAALTVAVLTLVVVVISILIAVLLTRGLLKQLGGEPTYAAQIAQQIADGDLTANVQTK 240 Query: 255 SGDTSSLLYAIKKMRDGLVDIVSKVREGTYAIEQASAEIATGNHDLSSRTEQQAGVLEAA 314 +GD SSLL+AIK MRD LV IV++VR+GT+ IEQAS+EIA+GN DLSSRTEQQA LE Sbjct: 241 TGDNSSLLFAIKNMRDSLVSIVAQVRQGTFTIEQASSEIASGNLDLSSRTEQQASSLEET 300 Query: 315 ASSMEQLMATVKQNAENAREASELAVSASHVAGQGGVVVAEVVSTMEGINASSRKIVDII 374 AS+ME+LM TVKQNA+NA++AS+LAVSAS VA QGG VVA+VV+TM+GINASSRKIVDII Sbjct: 301 ASAMEELMTTVKQNADNAKQASQLAVSASEVASQGGEVVAQVVTTMDGINASSRKIVDII 360 Query: 375 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEITGLIKDSV 434 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEIT LI DSV Sbjct: 361 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEITELINDSV 420 Query: 435 AQIEQGSTLVGQAGATMEDVVASVQRVTSVMAEISNATQEQSQGIAQVNQAISRMEETTQ 494 +QIE+GS+LV QAG TME+VV SV+RVT V+AEIS A+QEQS GI QVN AI+ M+E TQ Sbjct: 421 SQIERGSSLVEQAGQTMENVVNSVKRVTDVVAEISMASQEQSHGITQVNTAITHMDEATQ 480 Query: 495 QNSALVEEAASAAGSMSEQAGVLARLVSIFKMEA 528 QNSALVEEAA+AA SM EQAG L+ LV+ F+++A Sbjct: 481 QNSALVEEAAAAANSMKEQAGALSGLVATFRLDA 514 >gi|300311037|ref|YP_003775129.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 522 Score = 558 bits (1438), Expect = e-160, Method: Compositional matrix adjust. Identities = 314/520 (60%), Positives = 400/520 (76%), Gaps = 1/520 (0%) Query: 13 MKFFRELKIGTRLSLAFALSLALTVLLAAISLSSIRSLTVSIKAADAVQNQRLLPLFLAR 72 MK E+KIG +LSL FA L L + L A ++ I SL +I A+ ++N++L PL+LAR Sbjct: 1 MKVLSEMKIGVKLSLGFASQLLLLLALVAAAMLGINSLRETIVYANKLKNEQLEPLYLAR 60 Query: 73 EALDQTGIAARNAYVFKSDADAQKELLIVDEQRQLYLKALRDMEPHFAGNPDFEQMRKGL 132 EALDQTGIAARNAYVF SDADA+ EL IVDEQ+ +YL+ L+ +EP A F +R+GL Sbjct: 61 EALDQTGIAARNAYVFVSDADAKNELNIVDEQKAIYLQQLQLLEPRLADRAGFAAVREGL 120 Query: 133 LKMAEELKRPRIYRESGRSEEFRDFLVYECSPLRRKIVQDINKIIDEVGAENLTAHDATV 192 L+MAEELKRPR YR+SG E +RDFLV ECSPLRRKIV +IN++ID++ AE+ TA D Sbjct: 121 LQMAEELKRPRRYRDSGAMEAYRDFLVNECSPLRRKIVANINQLIDQISAESTTAGDTAE 180 Query: 193 STATHAAIVVGVLTSVVALISVIVAFAMTRSILQQLGGEPAYAAAIAQKIAAGDLTAIVE 252 + A A + + +L + LI+V++AF +TRS+L+QLGGEPAYA IAQ+IA GDL V Sbjct: 181 NAAKQALLFISLLAGLALLIAVVIAFFITRSLLRQLGGEPAYAMGIAQRIAHGDLAVDVV 240 Query: 253 TKSGDTSSLLYAIKKMRDGLVDIVSKVREGTYAIEQASAEIATGNHDLSSRTEQQAGVLE 312 T+S D SSLLYAIK MRD L IV++VR+GT +IE+A +EI++GN DLS RTE+QA LE Sbjct: 241 TRSHDQSSLLYAIKMMRDSLSRIVAQVRQGTDSIERACSEISSGNADLSGRTERQASSLE 300 Query: 313 AAASSMEQLMATVKQNAENAREASELAVSASHVAGQGGVVVAEVVSTMEGINASSRKIVD 372 AS+MEQ+ + V+Q+A+NA +A++LA SAS +A +GG ++ +VV+TME I+ SS KIVD Sbjct: 301 ETASAMEQITSAVRQSADNAIQANQLAGSASSIALKGGQMMGDVVATMEDIHHSSVKIVD 360 Query: 373 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEITGLIKD 432 II VIDGIAFQTNILALNAAVEAARAGE GRGFAVVASEVR+LAQRSA AAKEI LI Sbjct: 361 IISVIDGIAFQTNILALNAAVEAARAGEGGRGFAVVASEVRTLAQRSAAAAKEIKELISA 420 Query: 433 SVAQIEQGSTLVGQAGATMEDVVASVQRVTSVMAEISNATQEQSQGIAQVNQAISRMEET 492 SVA++E GS LV AG TM ++V SVQ V+ V+AEI+ +++EQS GI QVN AIS M+E Sbjct: 421 SVAKVESGSGLVKGAGETMGELVGSVQNVSKVIAEITASSREQSTGIEQVNDAISHMDEV 480 Query: 493 TQQNSALVEEAASAAGSMSEQAGVLARLVSIFKMEAPGTL 532 TQQNSALVE++A+AA +++ QA LARLVS FK+ AP L Sbjct: 481 TQQNSALVEQSAAAAEALTAQAQSLARLVSTFKV-APDAL 519 >gi|300313891|ref|YP_003777983.1| methyl-accepting chemotaxis I protein [Herbaspirillum seropedicae SmR1] Length = 544 Score = 527 bits (1358), Expect = e-151, Method: Compositional matrix adjust. Identities = 287/514 (55%), Positives = 377/514 (73%) Query: 13 MKFFRELKIGTRLSLAFALSLALTVLLAAISLSSIRSLTVSIKAADAVQNQRLLPLFLAR 72 M +LKIGT+L L F + + L ++L +L + +++ +++ + V + +L PL++AR Sbjct: 1 MNQLSKLKIGTQLRLGFGIVIVLMLILITFALMRMNAISAAVQYQETVTDTKLEPLYVAR 60 Query: 73 EALDQTGIAARNAYVFKSDADAQKELLIVDEQRQLYLKALRDMEPHFAGNPDFEQMRKGL 132 EALDQTG+AARNAY+F A+A KEL ++D+Q+ LYL ALR +EP AG FE+ + GL Sbjct: 61 EALDQTGLAARNAYIFHDQAEALKELALLDQQKALYLDALRQLEPVLAGQAQFEKAKAGL 120 Query: 133 LKMAEELKRPRIYRESGRSEEFRDFLVYECSPLRRKIVQDINKIIDEVGAENLTAHDATV 192 L MAEELKRPR YRESG+ E + +FLV ECSPLRR+IVQDI+ ++ V E A D Sbjct: 121 LAMAEELKRPRKYRESGQMEAYGEFLVKECSPLRRQIVQDIDALLKVVQRETKAAGDRAD 180 Query: 193 STATHAAIVVGVLTSVVALISVIVAFAMTRSILQQLGGEPAYAAAIAQKIAAGDLTAIVE 252 + + ++ +++ +S+ A+ + +S+L QLGGEP YA I +IA G+L+A V+ Sbjct: 181 ALFASSLRLIMACAAIILGVSIATAWLIRKSLLGQLGGEPRYAVEITGRIAHGELSAPVD 240 Query: 253 TKSGDTSSLLYAIKKMRDGLVDIVSKVREGTYAIEQASAEIATGNHDLSSRTEQQAGVLE 312 T GD SSLLY I+ MRD L +V +VR GT+AI AS+EIA GN +LS RTEQQA LE Sbjct: 241 TAPGDRSSLLYEIRVMRDKLASLVQQVRVGTHAIADASSEIAVGNQNLSERTEQQADTLE 300 Query: 313 AAASSMEQLMATVKQNAENAREASELAVSASHVAGQGGVVVAEVVSTMEGINASSRKIVD 372 ++M++L V++NA+NA++A LA SAS VA Q G VV +VV TM I+ASSRKIVD Sbjct: 301 KTVAAMDELTQAVRRNADNAQQAKHLAGSASDVASQAGTVVQQVVDTMGQIDASSRKIVD 360 Query: 373 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEITGLIKD 432 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA+AA+EI LI Sbjct: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRSLAQRSASAAREIKSLIDS 420 Query: 433 SVAQIEQGSTLVGQAGATMEDVVASVQRVTSVMAEISNATQEQSQGIAQVNQAISRMEET 492 SV+ + GS LV QAGATM+DVV SVQRV++V+ EIS A+Q QS GI +VN AI+R++E Sbjct: 421 SVSSVTDGSRLVEQAGATMQDVVESVQRVSAVVVEISAASQAQSDGILEVNTAIARLDEN 480 Query: 493 TQQNSALVEEAASAAGSMSEQAGVLARLVSIFKM 526 TQQN+ALVEEAA+A+ SMS+QA L +LV FK+ Sbjct: 481 TQQNAALVEEAAAASQSMSQQADHLNQLVGAFKL 514 >gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 563 Score = 384 bits (987), Expect = e-108, Method: Compositional matrix adjust. Identities = 243/529 (45%), Positives = 344/529 (65%), Gaps = 30/529 (5%) Query: 19 LKIGTRLSLAFALSLALTVLLAAISLSSIRSLTVSIKAADAVQNQRLLPLFLAREALDQT 78 +K+GTRL L FA + L VL+ + ++ + V+N L +E L+ Sbjct: 5 MKMGTRLGLGFAWVVLLLVLVTGFGIFNMHQVQGRFTHVVEVKNPESA---LVKEMLETV 61 Query: 79 G---IAARNAYVFKSDADAQKELLIVDEQRQLYLKALRDMEPHFAGNPDFEQMRKGLLKM 135 G I+ RN + + D E ++ Q Y A + ++ FA + D K L Sbjct: 62 GERSISLRNLMLPAAPEDVDIEAQYIEAQSLKYKMAAQKLQQLFAESSDTSDEEKAAL-- 119 Query: 136 AEELKRPRIYRESGRSE----------------EFRDFLVYECSPLRRKIVQDINKIIDE 179 P+I ++ ++E E FL + P+++ ++ + Sbjct: 120 ------PKIAAQASKAEKLINEAVEFGKRREAYELAQFLKEQYLPVQKSWQVELKALAAL 173 Query: 180 VGAENLTAHDATVSTATHAAIVVGVLTSVVALISVIVAFAMTRSILQQLGGEPAYAAAIA 239 N A +A+ + A +++ +++++ + +V+ AF +TR +L++LGGEP YA IA Sbjct: 174 EDQLNKEAAEASAVAYSRARMLMLLISAIGVVTAVLAAFWLTRHLLRKLGGEPDYAVQIA 233 Query: 240 QKIAAGDLTAIVETKSGDTSSLLYAIKKMRDGLVDIVSKVREGTYAIEQASAEIATGNHD 299 +IA GDL +++T++GD SL+ A++ MRD L IV++VR+G+ I AS+EIA GN D Sbjct: 234 GQIAEGDLAVVIDTRAGDHDSLMAAMRVMRDKLAAIVAEVRKGSETITTASSEIARGNLD 293 Query: 300 LSSRTEQQAGVLEAAASSMEQLMATVKQNAENAREASELAVSASHVAGQGGVVVAEVVST 359 LS RTEQQAG LE ASSMEQL +TVKQNAENA +A++LA++AS VA QGG +V++VV T Sbjct: 294 LSGRTEQQAGALEETASSMEQLNSTVKQNAENAHQANDLALAASDVAVQGGSIVSQVVQT 353 Query: 360 MEGINASSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRS 419 M+ INASS+K+ DI+ VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRS Sbjct: 354 MQSINASSQKVADIVSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRS 413 Query: 420 ATAAKEITGLIKDSVAQIEQGSTLVGQAGATMEDVVASVQRVTSVMAEISNATQEQSQGI 479 A+AAKEI LI DSV ++E GS LV QAG+TM D+V S++RVT VM EI++A +EQS GI Sbjct: 414 ASAAKEIKVLIGDSVGKVENGSKLVEQAGSTMHDIVTSIRRVTDVMTEINHANREQSSGI 473 Query: 480 AQVNQAISRMEETTQQNSALVEEAASAAGSMSEQAGVLARLVSIFKMEA 528 QVN+AI ++++ TQQN+ALVE+AA+AA S+ EQA L +LVS+F+++A Sbjct: 474 EQVNEAIIQIDDMTQQNAALVEQAAAAARSLQEQAAGLQQLVSVFRLDA 522 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.127 0.326 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,072,494 Number of extensions: 34584 Number of successful extensions: 530 Number of sequences better than 1.0e-08: 69 Number of HSP's gapped: 280 Number of HSP's successfully gapped: 70 Length of query: 545 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 455 Effective length of database: 1,193,720 Effective search space: 543142600 Effective search space used: 543142600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)