BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0202.p (228 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313922|ref|YP_003778014.1| LysR family transcription regul... 136 1e-33 gi|300309660|ref|YP_003773752.1| LysR family transcription regul... 119 2e-28 gi|300309921|ref|YP_003774013.1| LysR family transcription regul... 102 3e-23 gi|300311443|ref|YP_003775535.1| LysR family transcription regul... 100 2e-22 gi|300313017|ref|YP_003777109.1| LysR family transcription regul... 99 2e-22 >gi|300313922|ref|YP_003778014.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 308 Score = 136 bits (343), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 78/232 (33%), Positives = 122/232 (52%), Gaps = 12/232 (5%) Query: 1 LLAAAEHIEHRSSNLTQTPRGRLRIATPPTVGERLIVPTLVAFQRRYPEVEYTVIVDPSP 60 +L +E + H +TPRG LRI + + ++ +V + RRYP V ++ Sbjct: 72 MLEYSEDMRHALDAPDETPRGLLRITASTSFAQTQLIQAVVEYGRRYPGVAVDLLALDRT 131 Query: 61 ADMAAERIDLSIRLSDWLEPNLIARKLGEWPVVICASPEYLRLHGMPRTANDLKNRVFIT 120 ++ ERIDL+IR+++ LEPNLIAR LG +ICA+P+YL HG+PR DL +T Sbjct: 132 VNLVEERIDLAIRMTNRLEPNLIARPLGVCRSIICATPDYLARHGLPRKVEDLALHNCLT 191 Query: 121 HMMV-------DMTKRKLRLN-----GEPLDIDLGQHFSTNDTSVMRTAAIEGAGLIIVP 168 H V D K+K R +P + +G S N+ +V+ A + G G+ +P Sbjct: 192 HSYVGRSLWQFDPKKKKARSGRGASAAKPQSVAVGGSISANEVTVLLQAVLAGVGIGHMP 251 Query: 169 TSVIEKELASGELVVVVPSVVPDPVTLYAAYLSRQHQPLALQLLTDFLPEHI 220 + +ASG+LV ++P P + +Y Y SR+H P L+ + DFL + Sbjct: 252 AYTVAPLVASGQLVQLLPDYEPLQLGMYGVYASRKHMPATLRTMLDFLAQRF 303 >gi|300309660|ref|YP_003773752.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 337 Score = 119 bits (298), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 113/222 (50%), Gaps = 5/222 (2%) Query: 1 LLAAAEHIEHRSSNLTQTPRGRLRIATPPTVGERLIVPTLVAFQRRYPEVEYTVIVDPSP 60 +LA + E N+T+ P+GRLRI P +VG +++P L F RYP++E + + P Sbjct: 72 ILADLDETEQSFRNVTRGPQGRLRIDVPASVGRLMLLPNLCDFYTRYPDIELMMGMGDRP 131 Query: 61 ADMAAERIDLSIRLSDWLEPNLIARKLGEWPVVICASPEYLRLHGMPRTANDLKNRVFIT 120 D+ E +D IR+ + + +++AR++G + V CA+P YL HG+P T DL+ + Sbjct: 132 VDLVQEAVDCVIRIGELQDSSMVARRIGTFQTVTCAAPAYLERHGVPHTIEDLQQHKAV- 190 Query: 121 HMMVDMTKRKLRLN----GEPLDIDLGQHFSTNDTSVMRTAAIEGAGLIIVPTSVIEKEL 176 H T R + + G ++ + + N+ A++G G++ P ++ + + Sbjct: 191 HYFSSRTGRTIDWDFVVEGVTREVKMNGKLAVNEADAYVECALQGFGMVQAPLYMVTRHI 250 Query: 177 ASGELVVVVPSVVPDPVTLYAAYLSRQHQPLALQLLTDFLPE 218 G LV V+ P P+ + YL +H ++ D++ E Sbjct: 251 DEGRLVEVLSQWKPAPMPISVVYLHNRHLSPKVRAFVDWVAE 292 >gi|300309921|ref|YP_003774013.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 299 Score = 102 bits (254), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 65/225 (28%), Positives = 111/225 (49%), Gaps = 3/225 (1%) Query: 1 LLAAAEHIEHRSSNLTQTPRGRLRIATPPTVGERLIVPTLVAFQRRYPEVEYTVIVDPSP 60 ++AA E + S+ + P G LRI P T G + P F R+PE+ + + Sbjct: 72 IVAALEEADDLLSSGSAKPTGLLRINAPLTFGVLHLAPLWPMFLERHPEISLDITLSDRI 131 Query: 61 ADMAAERIDLSIRLSDWLEPNLIARKLGEWPVVICASPEYLRLHGMPRTANDLKNRVFIT 120 D+ E D++IR++ + L+ RKL + +CASP YL HG P ++L I+ Sbjct: 132 VDIIDEGYDMAIRIARLSDSTLVHRKLTSTSLHVCASPAYLDAHGTPAHPHELAQHQTIS 191 Query: 121 HMMVDMTKRKLRLNG--EPLDIDLGQHFSTNDTSVMRTAAIEGAGLIIVPTSVIEKELAS 178 + + +K + + NG P+ + + N+ AA+ G G+ PT +I++ L S Sbjct: 192 YSY-NQSKDEWQFNGPEGPVSVRVSSRLHVNNGDSCVQAALGGIGITRQPTFMIDQYLRS 250 Query: 179 GELVVVVPSVVPDPVTLYAAYLSRQHQPLALQLLTDFLPEHIRKI 223 G+LV ++ + +YA Y SR H P ++ + DFL E ++ Sbjct: 251 GQLVSILGDYGAPELGIYAVYPSRAHLPAKMRAMLDFLTEAFAQV 295 >gi|300311443|ref|YP_003775535.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 324 Score = 99.8 bits (247), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 65/221 (29%), Positives = 108/221 (48%), Gaps = 4/221 (1%) Query: 6 EHIEHRSSNLTQT---PRGRLRIATPPTVGERLIVPTLVAFQRRYPEVEYTVIVDPSPAD 62 E IEH S++LT++ P G LR+A P + + + F YP+V+ +++ AD Sbjct: 74 EDIEHASASLTESQGEPAGSLRVAAPVDFFDNFSIEWMHEFMHLYPKVQLEFVLNDGRAD 133 Query: 63 MAAERIDLSIRLSDWLEPNLIARKLGEWPVVICASPEYLRLHGMPRTANDL-KNRVFITH 121 + AE IDL+ R + +L+ARKL + + + ASP YL G P++ DL + T Sbjct: 134 LIAEGIDLAFRGGVLPDSSLVARKLVQSHLALIASPRYLERQGTPQSLTDLTAHACLATS 193 Query: 122 MMVDMTKRKLRLNGEPLDIDLGQHFSTNDTSVMRTAAIEGAGLIIVPTSVIEKELASGEL 181 T KL P + + N AA G G+ ++PT + ++L +G L Sbjct: 194 QAPQHTVWKLEGPHGPESVKVTPRLCVNTAQGQLRAARAGLGIALLPTMLASEDLRNGTL 253 Query: 182 VVVVPSVVPDPVTLYAAYLSRQHQPLALQLLTDFLPEHIRK 222 V ++P D + YA Y+ R+ P A+ L +F + + + Sbjct: 254 VNILPDYQRDTMGFYAVYVHRRQLPSAVSALIEFFADKLER 294 >gi|300313017|ref|YP_003777109.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 305 Score = 99.4 bits (246), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 113/229 (49%), Gaps = 7/229 (3%) Query: 2 LAAAEHIEHRSSNLTQTPRGRLRIATPPTVGERLIVPTLVAFQRRYPEVEYTVIVDPSPA 61 L + E + + + P G LRI + + + I P L F +RYPEV VI Sbjct: 73 LTQMKEAEQQVNAASAAPSGTLRITSSLSFCMKHISPLLPRFHQRYPEVRLEVIAANRYM 132 Query: 62 DMAAERIDLSIRLSDWLEP--NLIARKLGEWPVVICASPEYLRLHGMPRTANDLKNRVFI 119 D+ IDL+IR ++ EP N+ R+L ++ A+P YL G PRT +DL + Sbjct: 133 DLLDSDIDLAIRTREF-EPDANIAVRRLATTRRILAAAPGYLAARGTPRTLDDLAQHDLL 191 Query: 120 THMMVDMTKRKLRL---NGEPLDIDLGQHFSTNDTSVMRTAAIEGAGLIIVPTSVIEKEL 176 + R L L +G +++ +ND ++R AA+EG G++I P +I ++ Sbjct: 192 VYSHAKEPNR-LHLSGRDGSQRTLEIKSLMQSNDGQIIRAAALEGLGILIQPNYIIYDDI 250 Query: 177 ASGELVVVVPSVVPDPVTLYAAYLSRQHQPLALQLLTDFLPEHIRKISH 225 +G LV V+ +++ AY R+H P +++ DFL +H ++ + Sbjct: 251 VAGRLVPVLDEWDLPRLSINIAYQGRKHLPARVRVFIDFLVQHFEEMDY 299 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.136 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 692,569 Number of extensions: 27396 Number of successful extensions: 165 Number of sequences better than 1.0e-08: 30 Number of HSP's gapped: 139 Number of HSP's successfully gapped: 30 Length of query: 228 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 146 Effective length of database: 1,231,600 Effective search space: 179813600 Effective search space used: 179813600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)