BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0200.p (338 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310278|ref|YP_003774370.1| transcription regulator protein... 284 8e-78 gi|300313720|ref|YP_003777812.1| LysR family transcription regul... 258 5e-70 gi|300310624|ref|YP_003774716.1| transcription regulator protein... 222 3e-59 gi|300313017|ref|YP_003777109.1| LysR family transcription regul... 121 8e-29 gi|300311868|ref|YP_003775960.1| LysR family transcription regul... 120 1e-28 >gi|300310278|ref|YP_003774370.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 313 Score = 284 bits (726), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 143/297 (48%), Positives = 201/297 (67%) Query: 29 MNTNATDYPLRVIIFSRVAELGNLAEAAFELRLSCATIGQHIHSLETLLETSLLHHKGEA 88 M NA DY R++IFSRV ELG ++AA EL L+ +++ QHI +LE +L T+LLH Sbjct: 1 MKNNAMDYLPRMVIFSRVVELGAFSKAARELGLTSSSVSQHISALEAMLGTTLLHRTTRK 60 Query: 89 LHLTESGKSFYSYCRHIINWFNEAHENLDSLNKEVDGKVSIAMSSFMASDFLMPILKEFI 148 L LTE+G SFY+ C I++ +EA + +SL+KE+ G++ IA SSFMAS++L+P L +FI Sbjct: 61 LSLTEAGHSFYANCSRIVDLASEARQLTESLHKELLGELRIAASSFMASEYLVPALDDFI 120 Query: 149 RTHPRLHIAIDISDAPGELLENGADLALRVGKRNSVDDVLLAELGTILCAAPEYLRTMGP 208 R HP+L I ID++D +L++ DLALRVGK +S +DV LA L +LCA+P YLR P Sbjct: 121 RAHPKLRINIDVNDHNIDLMDKSVDLALRVGKTSSENDVYLASLPAVLCASPAYLRAHAP 180 Query: 209 IRQPEDLLEQHLLLFAPNGSEPELTLQDRAGQQQALQAMPRIVTNHAQPLGQLALQGLGV 268 IR PEDL + L F P+GS E++L++R GQ L PR+ NHA+ L +LALQG GV Sbjct: 181 IRHPEDLPQHDFLFFTPHGSSVEVSLKNRGGQCAQLHLTPRVSANHARSLRRLALQGHGV 240 Query: 269 ACLPINQIGEDLAAGRLIPVLQEWTPAPLSVFLTSRYKDVAPPRILVCMAHIQAYFQ 325 A L ++ EDL AGRL VL +W FLT++Y++ P +I+ C+ H++AYF+ Sbjct: 241 ARLLACKVQEDLDAGRLEVVLPDWELDVYCAFLTTKYRESPPQKIVKCIEHLEAYFR 297 >gi|300313720|ref|YP_003777812.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 307 Score = 258 bits (659), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 137/299 (45%), Positives = 193/299 (64%) Query: 29 MNTNATDYPLRVIIFSRVAELGNLAEAAFELRLSCATIGQHIHSLETLLETSLLHHKGEA 88 + + DY R++IFSRV E+G+ + AA L LS +++ QHI +LE + +LLH Sbjct: 2 IKNDVMDYLPRMVIFSRVVEMGSFSGAASALGLSSSSVSQHISALEAAMGMTLLHRTTRK 61 Query: 89 LHLTESGKSFYSYCRHIINWFNEAHENLDSLNKEVDGKVSIAMSSFMASDFLMPILKEFI 148 L LTE+G++FY+ C I+ NEA + ++L+KEV G++ IA SSFMAS++L+P L+ I Sbjct: 62 LSLTEAGQTFYANCARIVVLANEARQTAENLHKEVVGELRIATSSFMASEYLVPALEGLI 121 Query: 149 RTHPRLHIAIDISDAPGELLENGADLALRVGKRNSVDDVLLAELGTILCAAPEYLRTMGP 208 + +P+L I ID++D +L+E G D+ALR GK +DV LA L ++LCAAP YL+ P Sbjct: 122 QQYPKLRINIDVNDHNVDLMEKGVDIALRAGKAPGPEDVFLAPLESVLCAAPAYLQRSAP 181 Query: 209 IRQPEDLLEQHLLLFAPNGSEPELTLQDRAGQQQALQAMPRIVTNHAQPLGQLALQGLGV 268 IR PEDL+ + F P GS EL L+DR GQQ ++ PRI NH L +L LQG GV Sbjct: 182 IRTPEDLMGHEFMFFTPLGSTMELGLRDRHGQQVQMRLTPRISVNHTHSLHKLTLQGHGV 241 Query: 269 ACLPINQIGEDLAAGRLIPVLQEWTPAPLSVFLTSRYKDVAPPRILVCMAHIQAYFQHQ 327 A L ++ EDL AGRL VL EWT FL++ Y+D P ++LVC+ HIQ YF+ + Sbjct: 242 ARLLQTKVQEDLDAGRLQRVLPEWTANGYCAFLSTNYRDQVPQKVLVCVEHIQDYFRRR 300 >gi|300310624|ref|YP_003774716.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 310 Score = 222 bits (566), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 113/287 (39%), Positives = 172/287 (59%) Query: 39 RVIIFSRVAELGNLAEAAFELRLSCATIGQHIHSLETLLETSLLHHKGEALHLTESGKSF 98 R+ F+RV ELG + AA L L+ +++ QH+ +LE L+ +LL+ L LTE+G F Sbjct: 11 RMATFARVVELGAFSRAAKALGLTTSSVSQHVRALELSLQATLLNRSTRKLSLTEAGTLF 70 Query: 99 YSYCRHIINWFNEAHENLDSLNKEVDGKVSIAMSSFMASDFLMPILKEFIRTHPRLHIAI 158 Y +C HI+ +EA +++ LN E+ G+V IA+SSFM++ +L+P L +FIR +P++ + + Sbjct: 71 YKHCAHIVTAASEAEQSIAVLNNEMVGEVRIAVSSFMSTKYLIPALHDFIRHNPKVRLRL 130 Query: 159 DISDAPGELLENGADLALRVGKRNSVDDVLLAELGTILCAAPEYLRTMGPIRQPEDLLEQ 218 +++D +L+E DLALR G+ D+ L +LCA+P YL PI P DLL Sbjct: 131 EVADNNVDLIEQRIDLALRAGRNRQPGDIFLGRFSDVLCASPSYLAVRPPIHSPVDLLHH 190 Query: 219 HLLLFAPNGSEPELTLQDRAGQQQALQAMPRIVTNHAQPLGQLALQGLGVACLPINQIGE 278 LLF P+G L + A ++ PRI NHA+ L LAL G G+ L +I + Sbjct: 191 DFLLFNPHGEPCFLEFSNAASGTVRVRLQPRISANHARSLRYLALDGHGITRLLECKIDD 250 Query: 279 DLAAGRLIPVLQEWTPAPLSVFLTSRYKDVAPPRILVCMAHIQAYFQ 325 DL AGRL+ VL +WT V++T R++D P ++ C+ HIQ YF+ Sbjct: 251 DLRAGRLVQVLPDWTLGGFDVYVTVRHRDNMPLKVRQCLEHIQHYFE 297 >gi|300313017|ref|YP_003777109.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 305 Score = 121 bits (303), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 84/287 (29%), Positives = 145/287 (50%), Gaps = 3/287 (1%) Query: 42 IFSRVAELGNLAEAAFELRLSCATIGQHIHSLETLLETSLLHHKGEALHLTESGKSFYSY 101 +F +VAELG+L+ AA L LS A + + +LE L L+ L L+ +G+ FY + Sbjct: 9 LFVQVAELGSLSRAAEALGLSNAAASRALAALEQRLGARLVERSTRRLGLSRAGEDFYRH 68 Query: 102 CRHIINWFNEAHENLDSLNKEVDGKVSIAMSSFMASDFLMPILKEFIRTHPRLHIAIDIS 161 C+ + EA + +++ + G + I S + P+L F + +P + + + + Sbjct: 69 CKAALTQMKEAEQQVNAASAAPSGTLRITSSLSFCMKHISPLLPRFHQRYPEVRLEVIAA 128 Query: 162 DAPGELLENGADLALRVGKRNSVDDVLLAELGT---ILCAAPEYLRTMGPIRQPEDLLEQ 218 + +LL++ DLA+R + ++ + L T IL AAP YL G R +DL + Sbjct: 129 NRYMDLLDSDIDLAIRTREFEPDANIAVRRLATTRRILAAAPGYLAARGTPRTLDDLAQH 188 Query: 219 HLLLFAPNGSEPELTLQDRAGQQQALQAMPRIVTNHAQPLGQLALQGLGVACLPINQIGE 278 LL+++ L L R G Q+ L+ + +N Q + AL+GLG+ P I + Sbjct: 189 DLLVYSHAKEPNRLHLSGRDGSQRTLEIKSLMQSNDGQIIRAAALEGLGILIQPNYIIYD 248 Query: 279 DLAAGRLIPVLQEWTPAPLSVFLTSRYKDVAPPRILVCMAHIQAYFQ 325 D+ AGRL+PVL EW LS+ + + + P R+ V + + +F+ Sbjct: 249 DIVAGRLVPVLDEWDLPRLSINIAYQGRKHLPARVRVFIDFLVQHFE 295 >gi|300311868|ref|YP_003775960.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 307 Score = 120 bits (302), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 93/291 (31%), Positives = 139/291 (47%), Gaps = 15/291 (5%) Query: 42 IFSRVAELGNLAEAAFELRLSCATIGQHIHSLETLLETSLLHHKGEALHLTESGKSFYSY 101 IF RVAEL + + AA +L L A++ I LE +L T LL + LT G++FY Sbjct: 9 IFQRVAELASFSGAARQLGLPNASVSLAIQQLEQMLGTRLLQRTTRRVQLTADGEAFYRR 68 Query: 102 CRHIINWFNEAHENLDSLNKEVDGKVSIAMSSFMASDFLMPILKEFIRTHPRLHIAIDIS 161 R +++ F + + G++ + MSS MA + ++P L F+ HP+L I + S Sbjct: 69 SRELLDEFESLRGMFHDGAQALSGRLRVDMSSAMAREVVLPALPSFLDKHPQLEIELSAS 128 Query: 162 DAPGELLENGADLALRVGKRNSVDDVLL-----AELGTILCAAPEYLRTMGPIRQPEDLL 216 D +L+ G D LR G ++DD L L I CA+PEYLR G + EDL Sbjct: 129 DRRVDLVAEGFDCVLRTG---TLDDSSLVARPIGHLVQINCASPEYLRRYGTPQTLEDLA 185 Query: 217 EQHLLLFAP--NGSEPELTLQDRAGQQ-QALQAMPRIVTNHAQPLGQLALQGLGVACLPI 273 + L+ + G P D GQQ ++L I N + L GLG+ LP+ Sbjct: 186 QHRLVHYRQVLGGRSPGWEWFD--GQQTRSLPMAGSITVNSTETYYAACLAGLGLIQLPL 243 Query: 274 --NQIGEDLAAGRLIPVLQEWTPAPLSVFLTSRYKDVAPPRILVCMAHIQA 322 Q + L G ++ VL ++ PAP+ V L + P R+ M + A Sbjct: 244 VGAQKRQMLDGGHVVEVLPQYRPAPMPVSLLYASRRHVPARLAGFMDWLHA 294 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.136 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 958,002 Number of extensions: 35774 Number of successful extensions: 214 Number of sequences better than 1.0e-08: 38 Number of HSP's gapped: 193 Number of HSP's successfully gapped: 38 Length of query: 338 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 252 Effective length of database: 1,212,660 Effective search space: 305590320 Effective search space used: 305590320 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)