BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0196.p (549 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310329|ref|YP_003774421.1| chaperonin GroEL [Herbaspirillu... 1071 0.0 gi|300313723|ref|YP_003777815.1| chaperonin GroEL [Herbaspirillu... 802 0.0 >gi|300310329|ref|YP_003774421.1| chaperonin GroEL [Herbaspirillum seropedicae SmR1] Length = 549 Score = 1071 bits (2771), Expect = 0.0, Method: Compositional matrix adjust. Identities = 547/549 (99%), Positives = 548/549 (99%) Query: 1 MAAKQVIFGDEARAKIVNGVNILANAVKVTLGPKGRNVVLERSFGAPTVTKDGVSVAKEI 60 MAAKQVIFGDEARAK+VNGVNILANAVKVTLGPKGRNVVLERSFGAPTVTKDGVSVAKEI Sbjct: 1 MAAKQVIFGDEARAKVVNGVNILANAVKVTLGPKGRNVVLERSFGAPTVTKDGVSVAKEI 60 Query: 61 ELKDKLENMGAQLVKEVASKTSDNAGDGTTTATVLAQAIVREGFKYVAAGFNPTDLKRGI 120 ELKDKLENMGAQLVKEVASKTSDNAGDGTTTATVLAQAIVREGFKYVAAGFNPTDLKRGI Sbjct: 61 ELKDKLENMGAQLVKEVASKTSDNAGDGTTTATVLAQAIVREGFKYVAAGFNPTDLKRGI 120 Query: 121 DKAVTAIVGEVKNLAKPTTTSKEIAQVGSISANSDADIGDIIAKAMEKVGKEGVITVEDG 180 DKAVTAIVGEVKNLAKPTTTSKEIAQVGSISANSDADIGDIIAKAMEKVGKEGVITVEDG Sbjct: 121 DKAVTAIVGEVKNLAKPTTTSKEIAQVGSISANSDADIGDIIAKAMEKVGKEGVITVEDG 180 Query: 181 KSLENELDIVEGMQFDRGYLSPYFINNQEKQIVALDNPFILLFDKKISNIRDLLPVLEQV 240 KSLENELDIVEGMQFDRGYLSPYFINNQEKQIVALDNPFILLFDKKISNIRDLLPVLEQV Sbjct: 181 KSLENELDIVEGMQFDRGYLSPYFINNQEKQIVALDNPFILLFDKKISNIRDLLPVLEQV 240 Query: 241 AKAGRPLLIVAEDVEGEALATLVVNNIRGILKTAAVKAPGFGDRRKAMLEDIAILTGGQV 300 AKAGRPLLIVAEDVEGEALATLVVNNIRGILKTAAVKAPGFGDRRKAMLEDIAILTGGQV Sbjct: 241 AKAGRPLLIVAEDVEGEALATLVVNNIRGILKTAAVKAPGFGDRRKAMLEDIAILTGGQV 300 Query: 301 IAEEVGLTLEKATLAELGQAKRVEIGKENTTIIDGNGEAAGIEARVAMIRTQIGEATSDY 360 IAEEVGLTLEKATLAELGQAKRVEIGKENTTIIDGNGEAAGIEARVAMIRTQIGEATSDY Sbjct: 301 IAEEVGLTLEKATLAELGQAKRVEIGKENTTIIDGNGEAAGIEARVAMIRTQIGEATSDY 360 Query: 361 DREKLQERVAKLAGGVALIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALL 420 DREKLQERVAKLAGGVALIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALL Sbjct: 361 DREKLQERVAKLAGGVALIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALL 420 Query: 421 RARANVKDLKGDNPDQEAGIKIVLRAIEEPLRQIVFNAGDEPSVVVNKVLEGSGNFGYNA 480 RARANVKDLKGDNPDQEAGIKIVLRAIEEPLRQIVFNAGDEPSVVVNKVLEGSGNFGYNA Sbjct: 421 RARANVKDLKGDNPDQEAGIKIVLRAIEEPLRQIVFNAGDEPSVVVNKVLEGSGNFGYNA 480 Query: 481 SNGTYGDLVELGVLDPAKVTRSALQNAASVASLILTTDALVAEVTEDKPAGMPGGMGGMG 540 SNGTYGDLVELGVLDPAKVTRSALQNAASVASLILTTDALVAEV EDKPAGMPGGMGGMG Sbjct: 481 SNGTYGDLVELGVLDPAKVTRSALQNAASVASLILTTDALVAEVAEDKPAGMPGGMGGMG 540 Query: 541 GMGGMDGMM 549 GMGGMDGMM Sbjct: 541 GMGGMDGMM 549 >gi|300313723|ref|YP_003777815.1| chaperonin GroEL [Herbaspirillum seropedicae SmR1] Length = 540 Score = 802 bits (2072), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/521 (76%), Positives = 462/521 (88%) Query: 1 MAAKQVIFGDEARAKIVNGVNILANAVKVTLGPKGRNVVLERSFGAPTVTKDGVSVAKEI 60 M+AKQV F D ARA+IV GVN+LA+AVKVTLGPKGRNV+L+RSFGAP +TKDGVSVAKEI Sbjct: 1 MSAKQVKFHDTARARIVKGVNVLADAVKVTLGPKGRNVLLDRSFGAPVITKDGVSVAKEI 60 Query: 61 ELKDKLENMGAQLVKEVASKTSDNAGDGTTTATVLAQAIVREGFKYVAAGFNPTDLKRGI 120 ELKD+LENMGAQ+VK+VASKT+D AGDGTTTATVLAQ+IV+EG KYVAAG NP DLKRGI Sbjct: 61 ELKDRLENMGAQVVKQVASKTADVAGDGTTTATVLAQSIVQEGMKYVAAGMNPMDLKRGI 120 Query: 121 DKAVTAIVGEVKNLAKPTTTSKEIAQVGSISANSDADIGDIIAKAMEKVGKEGVITVEDG 180 DKAVTA + E++ +++P TT+KEIAQVG+ISANSD IG+IIA+AM+KVGKEGVITVEDG Sbjct: 121 DKAVTAAIDELRKISRPITTNKEIAQVGAISANSDEAIGNIIAQAMDKVGKEGVITVEDG 180 Query: 181 KSLENELDIVEGMQFDRGYLSPYFINNQEKQIVALDNPFILLFDKKISNIRDLLPVLEQV 240 KSLENELD+VEGMQFDRGYLSPYFIN+ +KQ+ LD+P +LL+DKKIS+IR+LLPVLE Sbjct: 181 KSLENELDVVEGMQFDRGYLSPYFINDPDKQLCQLDDPLVLLYDKKISSIRELLPVLEMT 240 Query: 241 AKAGRPLLIVAEDVEGEALATLVVNNIRGILKTAAVKAPGFGDRRKAMLEDIAILTGGQV 300 AKAG+PL IVAED++GEALATLVVN++RG+LK AAVKAPGFGDRRKAMLED+A+LTGG V Sbjct: 241 AKAGKPLFIVAEDIDGEALATLVVNSVRGVLKVAAVKAPGFGDRRKAMLEDLAVLTGGTV 300 Query: 301 IAEEVGLTLEKATLAELGQAKRVEIGKENTTIIDGNGEAAGIEARVAMIRTQIGEATSDY 360 I+EE G +LEK L +LG AKRVE+ K++TT+IDG G I+ARV I+ QI E TSDY Sbjct: 301 ISEETGKSLEKTALEDLGSAKRVEVRKDSTTVIDGAGAQDKIDARVKAIQAQIEETTSDY 360 Query: 361 DREKLQERVAKLAGGVALIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALL 420 DREKLQERVAKLAGGVA+IK+GAATEVEMKEKK RV+DALHATRAAVEEG+VPGGGVALL Sbjct: 361 DREKLQERVAKLAGGVAVIKIGAATEVEMKEKKDRVDDALHATRAAVEEGIVPGGGVALL 420 Query: 421 RARANVKDLKGDNPDQEAGIKIVLRAIEEPLRQIVFNAGDEPSVVVNKVLEGSGNFGYNA 480 RARA + L+G N DQ AGI+IVLRA+E PLR I NAGDEPSVVV KV G GNFGYNA Sbjct: 421 RARAAISKLEGANADQNAGIQIVLRALEAPLRVIAANAGDEPSVVVAKVYSGKGNFGYNA 480 Query: 481 SNGTYGDLVELGVLDPAKVTRSALQNAASVASLILTTDALV 521 +NG YGD+VELGV+DP KVTR+ALQNAASVASLILTTDA V Sbjct: 481 ANGEYGDMVELGVVDPTKVTRTALQNAASVASLILTTDATV 521 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.313 0.133 0.354 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,465,813 Number of extensions: 59778 Number of successful extensions: 254 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 254 Number of HSP's successfully gapped: 2 Length of query: 549 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 459 Effective length of database: 1,193,720 Effective search space: 547917480 Effective search space used: 547917480 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 133 (55.8 bits)