BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0185.p
         (315 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310969|ref|YP_003775061.1| deacetylase [Herbaspirillum ser...    77   2e-15

>gi|300310969|ref|YP_003775061.1| deacetylase [Herbaspirillum
           seropedicae SmR1]
          Length = 331

 Score = 76.6 bits (187), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 86/188 (45%), Gaps = 22/188 (11%)

Query: 132 HHATPAKAMGFCLFNNVAVAARHAIDVHGLERVAVIDFDVHHGNGTEDIFAHDPRVLMVS 191
           HHA      GFC+FN+ A+AAR         RVA++D DVH GNGT  I A D  V  +S
Sbjct: 131 HHAYGDHGAGFCVFNDAAIAARLMQAERRAARVAIVDLDVHQGNGTAAILARDDSVFTLS 190

Query: 192 FFQHPFYPFSGDGPTESHIVNVPVPAYSDGSAVRQLVTEKWLPALHA--------HQPQM 243
                 YPF      E   ++V +P   DG     +  E +L AL            PQ+
Sbjct: 191 LHGQNNYPFE----KEQSDLDVALP---DG-----VGDEDYLCALQQALATLQQRFAPQL 238

Query: 244 IFISAGFDAHREDDMGQMGLVEADYAWMTRQIMKIADQYAKGRIVSCLEGGYNLSALGRS 303
           +   AG D H  D +G+M L  A  A   + +   A ++     V+ + GGY    + ++
Sbjct: 239 LIYLAGADPHEGDRLGKMKLSLAGLAARDQAVFSYAREHEIPVAVT-MAGGYG-REIEQT 296

Query: 304 VVAHLKVL 311
           V  HL+ +
Sbjct: 297 VAVHLQTI 304


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.134    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,068,936
Number of extensions: 44522
Number of successful extensions: 129
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 230
Effective length of database: 1,217,395
Effective search space: 280000850
Effective search space used: 280000850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)