BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0174.p
         (398 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310312|ref|YP_003774404.1| hypothetical protein Hsero_0979...   370   e-104

>gi|300310312|ref|YP_003774404.1| hypothetical protein Hsero_0979
           [Herbaspirillum seropedicae SmR1]
          Length = 613

 Score =  370 bits (951), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 208/302 (68%), Positives = 235/302 (77%), Gaps = 25/302 (8%)

Query: 6   ARRGADAIAAADAELPPSNDPQRLRQARQATESLYGRADNPFTYMSRAELSAIVYDESGA 65
           AR  A+AI  ADAELPPS +PQRL +ARQATESLYGRA NPF  + RAELSAIVYD+SGA
Sbjct: 111 ARGSAEAIQLADAELPPSQEPQRLARARQATESLYGRAANPFAGLGRAELSAIVYDDSGA 170

Query: 66  YTTNERYAAANQRTALDQKYWAPVFQRALESGDWKPVITAALVFYASLSALEQTAYPDNY 125
           YT NERYAAANQRT LDQ++WAPVFQRALESG+W+PVITAALVFY SLSALE+TAYPDNY
Sbjct: 171 YTINERYAAANQRTELDQRFWAPVFQRALESGNWQPVITAALVFYVSLSALERTAYPDNY 230

Query: 126 AQLLQQYLDLYQLQSPSSPNA-LPPQQQADLARMLETLVLPLGPLALAGGVIRGLMLPRL 184
            QLLQQYLDLY+LQ    P A LP  QQADLARMLETLVLP GPLALAGG I+GL+LPRL
Sbjct: 231 PQLLQQYLDLYRLQ----PQAVLPAPQQADLARMLETLVLPGGPLALAGGAIQGLLLPRL 286

Query: 185 GPSLAELIAAAPRPMRRRTAPIWCCCNXIGNSAHAAQDSAYLVLLQRVFGVTRREDEPSP 244
           GPSLAE++AAAPR               + N AH+ QDS+YL+LLQRVFGV RREDEP+P
Sbjct: 287 GPSLAEILAAAPR---------LADLVQVNNLAHSVQDSSYLLLLQRVFGVQRREDEPAP 337

Query: 245 VRRAAAGTN-----------PRDFLAYGDRRLLAEAYAYAQSHAMALEDIDALARDLAAY 293
            RR +   N            RDFL+YGDRR LA AYAYAQ   +A E++DALA+DLA Y
Sbjct: 338 ARRTSVPGNGSGVGNMAALAARDFLSYGDRRYLAAAYAYAQQQGIAPEEVDALAQDLARY 397

Query: 294 RR 295
           R+
Sbjct: 398 RQ 399


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.133    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 917,710
Number of extensions: 28885
Number of successful extensions: 117
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 311
Effective length of database: 1,207,925
Effective search space: 375664675
Effective search space used: 375664675
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)