BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0170.p
         (273 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310310|ref|YP_003774402.1| fosmidomycin resistance protein...   385   e-108

>gi|300310310|ref|YP_003774402.1| fosmidomycin resistance protein
           [Herbaspirillum seropedicae SmR1]
          Length = 413

 Score =  385 bits (990), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 200/234 (85%), Positives = 217/234 (92%)

Query: 8   MTSATDSNATLPSGATASTDSPAAIAAQPLVMSIILACGGAHLINDMIQALLPSIYPMLK 67
           MTSAT+S A  PS AT   +SPA +AAQPLVMSIILACGGAHLINDMIQALLPSIYPMLK
Sbjct: 1   MTSATNSTAAAPSSATTPANSPAGLAAQPLVMSIILACGGAHLINDMIQALLPSIYPMLK 60

Query: 68  TGYGLTFTQVGLITLTFQVTASLLQPWIGMYTDRHPQPWLLPTGAVATLVGIVLLALAGS 127
           T YGL+FTQVGLITLTFQVTASLLQPWIGMYTDRHPQPWLLP+GAVATLVGIVLL++AGS
Sbjct: 61  TSYGLSFTQVGLITLTFQVTASLLQPWIGMYTDRHPQPWLLPSGAVATLVGIVLLSMAGS 120

Query: 128 FTAFLLAAALIGIGSSTFHPEASRIARMASGGRFGLAQSTFQVGGNAGSAFGPLLAAAIV 187
           F AFLLAAAL+GIGSSTFHPEASRIARMASGGRFGLAQSTFQVGGNAGSAFGPLLAAAIV
Sbjct: 121 FPAFLLAAALVGIGSSTFHPEASRIARMASGGRFGLAQSTFQVGGNAGSAFGPLLAAAIV 180

Query: 188 VPYGQGNVAWFVLLSVLAIVVLSRVSAWYRGHLAANKGKARPRAAQALPAATVR 241
           VP+GQ NVAWFVLL++L+I+VL+RVS WYR HLAA KG+ +PRA  +LPAATVR
Sbjct: 181 VPFGQANVAWFVLLALLSILVLTRVSGWYRSHLAATKGRTKPRATHSLPAATVR 234


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.133    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 705,679
Number of extensions: 24938
Number of successful extensions: 176
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 3
Length of query: 273
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 189
Effective length of database: 1,222,130
Effective search space: 230982570
Effective search space used: 230982570
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 130 (54.7 bits)