BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0168.p (328 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310309|ref|YP_003774401.1| methyl-accepting chemotaxis tra... 555 e-159 gi|300312458|ref|YP_003776550.1| methyl-accepting chemotaxis sen... 390 e-110 gi|300313312|ref|YP_003777404.1| methyl-accepting chemotaxis pro... 340 9e-95 gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra... 327 1e-90 gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 322 3e-89 >gi|300310309|ref|YP_003774401.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 625 Score = 555 bits (1429), Expect = e-159, Method: Compositional matrix adjust. Identities = 285/324 (87%), Positives = 305/324 (94%) Query: 1 MAVLVTILAALVLGALISRVLRRLSVVQRALEEIADGDGDLTRRLDTHGSTDELGRISAA 60 MAVLVT+LAALVLGALISR+L RL+VVQ ALEEIADGDGDLTRRLDTHG +DELGRI AA Sbjct: 298 MAVLVTVLAALVLGALISRLLGRLTVVQGALEEIADGDGDLTRRLDTHGRSDELGRIGAA 357 Query: 61 FNRFVDKVEHVMLDIREASHTIHAATRDIASGNMDLSQRTESQASSLEQTAAAMEQLTSS 120 FNRFVDK+EHVM+DIR+ASHTIHAA+RDIASGNMDLSQRTESQASSLEQTAAAMEQLTSS Sbjct: 358 FNRFVDKIEHVMIDIRDASHTIHAASRDIASGNMDLSQRTESQASSLEQTAAAMEQLTSS 417 Query: 121 VRQNADNAQEANTLSQSASEIAGRGGAMVEQVVQTMSAINASSQKIVDIISVIDGIAFQT 180 VR NADNA +AN LSQSAS+IA +GG MVEQVVQTM+ INASSQKIVDIISVIDGIAFQT Sbjct: 418 VRHNADNAMQANQLSQSASQIATQGGTMVEQVVQTMNGINASSQKIVDIISVIDGIAFQT 477 Query: 181 NILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEIKVLIGDSVEQVRAGEQTV 240 NILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEIKVLI DSV QV+AGE TV Sbjct: 478 NILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEIKVLITDSVGQVQAGEDTV 537 Query: 241 SQAGSTIRSVVESVRKVSDVVAEITSASREQSQGIQQTNDAVAHMDQATQQNAALVEEAA 300 +QAG+TIRSVV+SV+KVSDVVAEIT+ASREQSQGI Q NDAVAHMDQ TQQNAALVE+AA Sbjct: 538 AQAGATIRSVVDSVQKVSDVVAEITAASREQSQGINQANDAVAHMDQTTQQNAALVEQAA 597 Query: 301 AGAQQLQEQAARLAEVVALFRLRD 324 AGAQ LQEQA RLA +VALFRLRD Sbjct: 598 AGAQSLQEQAERLAGIVALFRLRD 621 >gi|300312458|ref|YP_003776550.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 684 Score = 390 bits (1003), Expect = e-110, Method: Compositional matrix adjust. Identities = 220/322 (68%), Positives = 266/322 (82%), Gaps = 1/322 (0%) Query: 1 MAVLVTILAALVLGALISRVLRRLSVVQRALEEIADGDGDLTRRLDTHGSTDELGRISAA 60 +AVL + +A++L I+R+LRRL VV+ A+EEIA GDGDLTRRLDT G DEL +IS A Sbjct: 273 LAVLAIVASAILLSYTITRLLRRLGVVRNAMEEIASGDGDLTRRLDTSGK-DELAQISRA 331 Query: 61 FNRFVDKVEHVMLDIREASHTIHAATRDIASGNMDLSQRTESQASSLEQTAAAMEQLTSS 120 FN F DK+ +LDIR AS ++ ++ +IASGNMDLS RTE QA SLE+TA+AME+LTS+ Sbjct: 332 FNHFADKISRTLLDIRRASESVKVSSSEIASGNMDLSARTEQQAGSLEETASAMEELTST 391 Query: 121 VRQNADNAQEANTLSQSASEIAGRGGAMVEQVVQTMSAINASSQKIVDIISVIDGIAFQT 180 V+QNADNA++AN L+ SAS++A GG +V QVV TMS+IN SS+KIVDIISVIDGIAFQT Sbjct: 392 VKQNADNARQANQLAVSASDVAVHGGQVVGQVVATMSSINESSRKIVDIISVIDGIAFQT 451 Query: 181 NILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEIKVLIGDSVEQVRAGEQTV 240 NILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEIK LI DSV++V G Q V Sbjct: 452 NILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEIKGLIDDSVQKVETGSQLV 511 Query: 241 SQAGSTIRSVVESVRKVSDVVAEITSASREQSQGIQQTNDAVAHMDQATQQNAALVEEAA 300 +QAGST+ VV SVR+V+D+V EI++AS+EQS GI + +AV MD+ATQQNAALVE+AA Sbjct: 512 AQAGSTMEEVVSSVRRVTDIVGEISAASQEQSSGITEVGNAVNQMDEATQQNAALVEQAA 571 Query: 301 AGAQQLQEQAARLAEVVALFRL 322 A A+ LQEQAA LA VVA F+L Sbjct: 572 AAAKSLQEQAAHLAAVVAGFKL 593 >gi|300313312|ref|YP_003777404.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 544 Score = 340 bits (872), Expect = 9e-95, Method: Compositional matrix adjust. Identities = 193/313 (61%), Positives = 240/313 (76%), Gaps = 4/313 (1%) Query: 12 VLGALISR-VLRRLSVVQRALEEIADGDGDLTRRLDTHGSTDELGRISAAFNRFVDKVEH 70 ++G LI+R + R L+ E IA+GD LTR +DT STDE+G + AA + + Sbjct: 202 LMGLLIARKIARSLAEAVELAETIAEGD--LTREIDT-SSTDEIGHLMAAMAKMNRNLVT 258 Query: 71 VMLDIREASHTIHAATRDIASGNMDLSQRTESQASSLEQTAAAMEQLTSSVRQNADNAQE 130 ++ +R +T+ AA+ IA+GNMDLS RTE QASSLEQTAAA E+LTS+V+QNA+NA + Sbjct: 259 IVATVRTGVNTVAAASSQIATGNMDLSARTEQQASSLEQTAAATEELTSTVKQNAENALQ 318 Query: 131 ANTLSQSASEIAGRGGAMVEQVVQTMSAINASSQKIVDIISVIDGIAFQTNILALNAAVE 190 A+ L+ +AS IA GG +V+QVV TM I +SS I DIISVIDGIAFQTNILALNAAVE Sbjct: 319 ADQLASAASGIAAEGGEVVKQVVTTMEEIRSSSLNIADIISVIDGIAFQTNILALNAAVE 378 Query: 191 AARAGEQGRGFAVVASEVRSLAQRSATAAKEIKVLIGDSVEQVRAGEQTVSQAGSTIRSV 250 AARAGEQGRGFAVVA+EVRSLAQRSA+AAKEIK LI DSV +V G Q V AG+T++ V Sbjct: 379 AARAGEQGRGFAVVATEVRSLAQRSASAAKEIKQLIDDSVSKVENGSQLVMSAGNTMQQV 438 Query: 251 VESVRKVSDVVAEITSASREQSQGIQQTNDAVAHMDQATQQNAALVEEAAAGAQQLQEQA 310 VESVR+V+DVV EI++ASREQS GI+Q N A++HMDQ+TQ+NAALVEEA A AQ LQEQA Sbjct: 439 VESVRRVTDVVTEISAASREQSLGIEQVNQAISHMDQSTQENAALVEEATAAAQSLQEQA 498 Query: 311 ARLAEVVALFRLR 323 +L V +F+LR Sbjct: 499 RQLERAVNVFKLR 511 >gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 327 bits (837), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 188/320 (58%), Positives = 246/320 (76%), Gaps = 4/320 (1%) Query: 4 LVTILAALVLGALISR-VLRRLSVVQRALEEIADGDGDLTRRLDTHGSTDELGRISAAFN 62 + +LAA++LG L++R +++ L+ R E +A GD LT R++ H S DE G++ A Sbjct: 200 MAAVLAAIILGYLMARSIVKPLTEAVRVAENVAAGD--LTTRIEPH-SRDETGQLMQALR 256 Query: 63 RFVDKVEHVMLDIREASHTIHAATRDIASGNMDLSQRTESQASSLEQTAAAMEQLTSSVR 122 + D + ++ +R + +I A+ +IASGN+DLS RTE QA SLE+TA+AME++TS+VR Sbjct: 257 KMNDNLIEIVSGVRRGTESITTASGEIASGNLDLSARTEQQAGSLEETASAMEEMTSTVR 316 Query: 123 QNADNAQEANTLSQSASEIAGRGGAMVEQVVQTMSAINASSQKIVDIISVIDGIAFQTNI 182 QNADNA++AN ++ SASEIA +GG +V +VV TM IN SS+KIVDII VIDGIAFQTNI Sbjct: 317 QNADNARQANQMAVSASEIALQGGQIVGRVVHTMDEINQSSRKIVDIIGVIDGIAFQTNI 376 Query: 183 LALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEIKVLIGDSVEQVRAGEQTVSQ 242 LALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA AAKEIK LI DSV +V G V+Q Sbjct: 377 LALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALIADSVGKVEGGSALVAQ 436 Query: 243 AGSTIRSVVESVRKVSDVVAEITSASREQSQGIQQTNDAVAHMDQATQQNAALVEEAAAG 302 AG+T+ VV SVR V+D+VAEI++AS EQS GI++ N AV MD+ TQQNAALVE+AAA Sbjct: 437 AGATMEQVVSSVRSVTDIVAEISAASAEQSSGIEEINRAVTQMDEGTQQNAALVEQAAAA 496 Query: 303 AQQLQEQAARLAEVVALFRL 322 A+ +QEQA RL + +++F+L Sbjct: 497 AKSMQEQAVRLTQSISIFKL 516 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 322 bits (825), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 193/319 (60%), Positives = 250/319 (78%), Gaps = 8/319 (2%) Query: 11 LVLGALISRVLRRLSVVQRALEE---IAD--GDGDLTRRLDTHGSTDELGRISAAFNRFV 65 +VLGA ++ +L R + R L + IA+ GDLT R+D+ S DE G++ AA Sbjct: 198 IVLGAALAWLLTR--SITRPLNQAVTIAETVAAGDLTSRIDSS-SRDETGKLLAALKTMN 254 Query: 66 DKVEHVMLDIREASHTIHAATRDIASGNMDLSQRTESQASSLEQTAAAMEQLTSSVRQNA 125 + ++ +R + TI+ A+R+IA+GN+DLS RTE+QA SLE+TA+AMEQLTS+V+QNA Sbjct: 255 GNLLDIVGRVRMGTETINTASREIATGNLDLSARTEAQAGSLEETASAMEQLTSTVKQNA 314 Query: 126 DNAQEANTLSQSASEIAGRGGAMVEQVVQTMSAINASSQKIVDIISVIDGIAFQTNILAL 185 DNA++AN L+ SAS++A +GGA+V+QVV TM AI+ASSQKI DII VIDGIAFQTNILAL Sbjct: 315 DNARQANELAASASQVATQGGAVVDQVVATMGAIHASSQKIADIIGVIDGIAFQTNILAL 374 Query: 186 NAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEIKVLIGDSVEQVRAGEQTVSQAGS 245 NAAVEAARAGEQGRGFAVVASEVRSLAQRSA+AAKEIK LI DSVE+V G + V++AG Sbjct: 375 NAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDDSVEKVDDGSRLVARAGD 434 Query: 246 TIRSVVESVRKVSDVVAEITSASREQSQGIQQTNDAVAHMDQATQQNAALVEEAAAGAQQ 305 T++ VV+SV +V+ VV EIT AS+EQS GI+Q N A+ H+D+ TQQNAALVE+AAA A+ Sbjct: 435 TMQEVVQSVARVTAVVREITLASQEQSDGIEQVNLAITHIDETTQQNAALVEQAAAAARS 494 Query: 306 LQEQAARLAEVVALFRLRD 324 +Q+QAA L + V++FRL D Sbjct: 495 MQDQAASLTDAVSVFRLED 513 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.313 0.123 0.305 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 573,235 Number of extensions: 16394 Number of successful extensions: 469 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 195 Number of HSP's successfully gapped: 71 Length of query: 328 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 242 Effective length of database: 1,212,660 Effective search space: 293463720 Effective search space used: 293463720 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 131 (55.1 bits)