BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0164.p
         (488 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312063|ref|YP_003776155.1| glycosyltransferase 1 protein [...    64   3e-11
gi|300310581|ref|YP_003774673.1| glycosyltransferase [Herbaspiri...    61   2e-10

>gi|300312063|ref|YP_003776155.1| glycosyltransferase 1 protein
           [Herbaspirillum seropedicae SmR1]
          Length = 391

 Score = 63.5 bits (153), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/146 (36%), Positives = 79/146 (54%), Gaps = 16/146 (10%)

Query: 261 VSNGVDMLRHSPRPMHPXREAVRRAQGLTGKPLLLAVGGVEPRKNTLGILQAFVRLRRVY 320
           + NGVD+     RP+   REAVRR   +TG  LL +VG + P K     + A  RL    
Sbjct: 193 LRNGVDL--QLFRPLE--REAVRRELEITGFTLL-SVGNLAPVKGHDLTIAALPRL---- 243

Query: 321 PQAQLVIAGGASVLDHAGYQRVFQAELAAAALPADAVRILGQVDDADMPSLFRCADVLVF 380
           P+A+L+IAG       +G ++     LAA     + VR LG +  + +   +  AD++V 
Sbjct: 244 PEARLLIAG-------SGPEQARLEALAAQLGVRERVRFLGALPQSALCRYYNAADMMVL 296

Query: 381 PSLKEGFGLVVLEAMASGVPVVVSRI 406
            S +EG+  V+LE+MA G PVV S++
Sbjct: 297 ASAREGWANVLLESMACGTPVVASKV 322


>gi|300310581|ref|YP_003774673.1| glycosyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 349

 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/111 (38%), Positives = 56/111 (50%), Gaps = 20/111 (18%)

Query: 291 KPLLLAVGGVEPRKNTLGILQAFVRLRRVYPQAQLVIAGGASVLDHAGYQRVFQAELAAA 350
           +PL L VG V   KN    ++AF++L    P  + V+  G             Q E    
Sbjct: 179 RPLFLYVGRVAVEKN----IEAFLKLD--LPGTKWVVGDGP------------QLEELTQ 220

Query: 351 ALPADAVRILGQVDDADMPSLFRCADVLVFPSLKEGFGLVVLEAMASGVPV 401
             P   VR LG     ++P+ + CADV VFPS  + FGLV+LEAMA GVPV
Sbjct: 221 RYPE--VRFLGAKGQDELPAYYNCADVFVFPSKTDTFGLVLLEAMACGVPV 269


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.138    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,702,714
Number of extensions: 77032
Number of successful extensions: 280
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 281
Number of HSP's successfully gapped: 4
Length of query: 488
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 399
Effective length of database: 1,198,455
Effective search space: 478183545
Effective search space used: 478183545
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 132 (55.5 bits)