BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0157.p (477 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311016|ref|YP_003775108.1| MocR family transcription regul... 933 0.0 gi|300311074|ref|YP_003775166.1| transcription regulator protein... 354 7e-99 gi|300313928|ref|YP_003778020.1| GntR family transcription regul... 151 9e-38 gi|300311134|ref|YP_003775226.1| transcription regulator protein... 145 8e-36 gi|300311139|ref|YP_003775231.1| MocR family transcription regul... 137 3e-33 >gi|300311016|ref|YP_003775108.1| MocR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 480 Score = 933 bits (2411), Expect = 0.0, Method: Compositional matrix adjust. Identities = 450/472 (95%), Positives = 461/472 (97%) Query: 1 MAVTPLYKQFADQLAASIRDGVLRPGERIASVRIASQQHKVSVTTVVRAYELLESRGIIE 60 MAVTPLYKQFADQLAASIRDGVLRPGERIASVRIASQQHKVSVTTVVRAYELLESRGIIE Sbjct: 1 MAVTPLYKQFADQLAASIRDGVLRPGERIASVRIASQQHKVSVTTVVRAYELLESRGIIE 60 Query: 61 SQPQSGYFVREQAESIPRPVIKPPSQADHPAWQESTEVDVSRLVLATLKTIQQDGTVPLG 120 SQPQSGYFVREQ E+ P+P ++ S+ DHPAWQESTEVDVSRLVLATLKTIQQDGTVPLG Sbjct: 61 SQPQSGYFVREQPEAPPKPALRTTSREDHPAWQESTEVDVSRLVLATLKTIQQDGTVPLG 120 Query: 121 SPYPNPALFPSHRLAQYAGRIARHASQSSVFDDLPPGHPDLLRQIARRYLENGLKVDPEE 180 SPYPNPALFPSHRLAQYAGRIARHASQSSVFDDLPPGHP+LLRQIARRYLENGLKVDPEE Sbjct: 121 SPYPNPALFPSHRLAQYAGRIARHASQSSVFDDLPPGHPELLRQIARRYLENGLKVDPEE 180 Query: 181 IVVTVGATEAINLCLQAVARPGDTIAVETPTFYAMLHAIERLGMRALEIPTDPQRGLDVG 240 IV+TVGATEAINLCLQAVARPGDTIAVETPTFYAMLHAIERLGMRALEIPTDPQRG+DVG Sbjct: 181 IVITVGATEAINLCLQAVARPGDTIAVETPTFYAMLHAIERLGMRALEIPTDPQRGIDVG 240 Query: 241 VLEERMKTQPVAACMVMPNFQNPLGFQMPDSEKERLVRLAEQHQMPLIENAVYSELYYGN 300 LEERMKTQ +AACMVMPNFQNPLGFQMPDSEKERLVRLAEQHQMP+IENAVYSELYYGN Sbjct: 241 ALEERMKTQAIAACMVMPNFQNPLGFQMPDSEKERLVRLAEQHQMPVIENAVYSELYYGN 300 Query: 301 AHPSSLKNYDREGLVLHCSSFSKSLTSAYRIGWAMPGRYRAQVEKLKFLNTLATPTAPQR 360 AHPSSLKNYDR+GLVLHCSSFSKSLTSAYRIGWAMPGRYRAQVEKLKFLNTLATPTAPQR Sbjct: 301 AHPSSLKNYDRDGLVLHCSSFSKSLTSAYRIGWAMPGRYRAQVEKLKFLNTLATPTAPQR 360 Query: 361 AIAEYLTQGGYERHLRRVRRVFAQQRDMMRHFVLRFFPAGTQVSEPQGGYVLWVELPQRV 420 AIAEYLTQGGYERHLRRVRR FAQQRDMMRHFVLRFFPAGTQVSEPQGGYVLWVELPQ V Sbjct: 361 AIAEYLTQGGYERHLRRVRRAFAQQRDMMRHFVLRFFPAGTQVSEPQGGYVLWVELPQGV 420 Query: 421 DAMELYRRSLALGITVAPGRIFAATNRYSHFIRLNYSYDWSKETEQALKLVG 472 DAMELYRRSLALGITVAPGRIFAATNRYSHFIRLNYSY WSKETEQALKLVG Sbjct: 421 DAMELYRRSLALGITVAPGRIFAATNRYSHFIRLNYSYAWSKETEQALKLVG 472 >gi|300311074|ref|YP_003775166.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 516 Score = 354 bits (909), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 192/472 (40%), Positives = 292/472 (61%), Gaps = 9/472 (1%) Query: 5 PLYKQFADQLAASIRDGVLRPGERIASVRIASQQHKVSVTTVVRAYELLESRGIIESQPQ 64 PLY++ AD ++I+ G L G+R+ SVR +QH+VS++T ++ +E G +E++P+ Sbjct: 41 PLYRRLADHYQSAIQAGTLVAGDRMPSVRDLMRQHQVSLSTALQTLRHMEEGGWLEARPR 100 Query: 65 SGYFVREQAESIPRPVIKPPSQADHPAWQ-ESTEVDVSRLVLATLKTIQQDGT--VPLGS 121 SGYFVR+ S RPV +P S A Q VS+ + ++Q G + L Sbjct: 101 SGYFVRQPRRSAIRPVQEPKSLLAIDAGQFVGIHERVSKYI-----ALRQAGAPHIDLSG 155 Query: 122 PYPNPALFPSHRLAQYAGRIARHASQSSVFDDLPPGHPDLLRQIARRYLENGLKVDPEEI 181 P L+ L Q A R R + G+ + +ARR L G+++D EE+ Sbjct: 156 MTCAPQLYAVETLKQAAMRALRERPELLTSAMPHNGNATFRQAVARRALNAGMRIDTEEV 215 Query: 182 VVTVGATEAINLCLQAVARPGDTIAVETPTFYAMLHAIERLGMRALEIPTDPQRGLDVGV 241 VVT G EA+NL ++AVA PGDTIAVE+PT++ +L A+E LGM+ALEIPT P G+ V Sbjct: 216 VVTHGCIEALNLAMRAVAGPGDTIAVESPTYFGLLQALENLGMKALEIPTSPHTGISVEA 275 Query: 242 LEERMKT-QPVAACMVMPNFQNPLGFQMPDSEKERLVRLAEQHQMPLIENAVYSELYYGN 300 LE ++T + A +V+PN QNPLG MP+ K++LVRL +Q ++PLIE+ Y+EL G+ Sbjct: 276 LELAVRTYGNIKAVVVVPNLQNPLGCIMPEDHKDQLVRLCDQLKLPLIEDDAYTELADGS 335 Query: 301 AHPSSLKNYDREGLVLHCSSFSKSLTSAYRIGWAMPGRYRAQVEKLKFLNTLATPTAPQR 360 PSSLK+ DR G V++C+S +K L R+GW GR+ +V+ LKF +T A Q Sbjct: 336 VTPSSLKSRDRNGNVIYCASLNKVLAPGMRLGWMNGGRWHERVKMLKFTHTRANEEWTQV 395 Query: 361 AIAEYLTQGGYERHLRRVRRVFAQQRDMMRHFVLRFFPAGTQVSEPQGGYVLWVELPQRV 420 A+++ Y+RHLRR+R++ QQR+ M + +FP GT+++ P GG LWVELP +V Sbjct: 396 TAADFIASPAYDRHLRRLRQMLKQQRERMAESIAAYFPEGTRLNLPNGGVGLWVELPVQV 455 Query: 421 DAMELYRRSLALGITVAPGRIFAATNRYSHFIRLNYSYDWSKETEQALKLVG 472 + +L+ R+LA G+ V+PG IF+ ++RY HF+R+ + +++E +QAL+ +G Sbjct: 456 CSQQLFERALAEGVGVSPGAIFSNSSRYGHFVRICCGHPFNRELDQALRRLG 507 >gi|300313928|ref|YP_003778020.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 472 Score = 151 bits (382), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 125/460 (27%), Positives = 212/460 (46%), Gaps = 28/460 (6%) Query: 6 LYKQFADQLAASIRDGVLRPGERIASVRIASQQHKVSVTTVVRAYELLESRGIIESQPQS 65 L +Q A+ LA I G LR GER+ SVR +Q H + +TVV AYE L +RG+++++ + Sbjct: 21 LVEQVANGLAGLIETGELRSGERLPSVRQFAQHHDIGSSTVVEAYEQLVARGMLQARRGA 80 Query: 66 GYFVREQA-ESIPRPVIKPPSQADHPAWQESTEVDVSRLVLATLKTIQQDGTVPL--GSP 122 G+FV +A +S V PP AW L + D VP+ G Sbjct: 81 GFFVAARAGQSGQHAVFVPPEPVIDSAW--------------LLSEMFADERVPIKAGCG 126 Query: 123 YPNPALFPSHRLAQYAGRIARHASQSSVFDDLPPGHPDLLRQIARRYLEN-GLKVDPEEI 181 + L Q RI R V P G+ LRQ+ ++L + L++ E++ Sbjct: 127 WLPGKWLNDEGLHQAERRIIRSPGAQQVGYGHPYGYAP-LRQLITQFLGHWSLELGIEQV 185 Query: 182 VVTVGATEAINLCLQAVARPGDTIAVETPTFYAMLHAIERLGMRALEIPTDPQRGLDVGV 241 + T GAT+A++L ++ + +PGDT+ ++ P + ++ + G+ + +P P G+D V Sbjct: 186 LTTHGATQALDLVIRTMTQPGDTVLIDDPGYCNLIAMLRLAGLNVIGVPRTPG-GVDTDV 244 Query: 242 LEERMKTQPVAACMVMPNFQNPLGFQMPDSEKERLVRLAEQHQMPLIENAVYSELYYGNA 301 LE +T QNP G + R+++ AE+H ++E+ ++ EL G A Sbjct: 245 LETLARTHHPKMFFTTSVLQNPTGTSYTPACAMRVLQAAERHGFWVVEDDIFREL--GQA 302 Query: 302 HPSSLKNYDREGLVLHCSSFSKSLTSAYRIGWAMPGRYRA-QVEKLKFLNTLATPTAPQR 360 L D V++ S+SK++ + R+G+ R A Q+ K + TL +R Sbjct: 303 TDPMLAALDGLQRVIYVGSYSKTIAPSLRVGYIACQRELARQIVHTKMVLTLTNSEINER 362 Query: 361 AIAEYLTQGGYERHLRRVRRVFAQQRDMMRHFVLRFFPAG-TQVSEPQGGYVLWVELPQ- 418 + LT+G + RH++ + + + + G T + +GG W + Sbjct: 363 LVHNVLTEGHHRRHVQTLNATLLSAQATLN---AKLSEVGLTPFTAARGGMFSWATIEGC 419 Query: 419 RVDAMELYRRSLALGITVAPGRIFAATNRYSHFIRLNYSY 458 + A E+ R+ GI +APG F + + R N Y Sbjct: 420 ELSAREIADRARQKGIWLAPGDFFHLSAPHQTSFRFNVGY 459 >gi|300311134|ref|YP_003775226.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 500 Score = 145 bits (366), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 121/462 (26%), Positives = 216/462 (46%), Gaps = 28/462 (6%) Query: 6 LYKQFADQLAASIRDGVLRPGERIASVRIASQQHKVSVTTVVRAYELLESRGIIESQPQS 65 L +Q + A I D +LR G R+ S+R + +++S TVV AY+ L ++G +ES+ S Sbjct: 40 LVEQIVRGIRARIDDKLLRSGMRMPSIRQFADTNQISRFTVVEAYDRLVAQGYLESRRGS 99 Query: 66 GYFVREQAESIPRPVIKPPSQADHPAWQESTE------VDVSRLVLATLKTIQQDGTVPL 119 G++V+E+A P + A Q + +DV LV + + +P Sbjct: 100 GFYVKERA----------PLGGSYGAAQAELDTEPGRGLDVVWLVRNMFRQMPP-AKMPG 148 Query: 120 GSPYPNPALFPSHRLAQYAGRIARHASQSSVFDDLPPGHPDLLRQIARRYLENGLKVDPE 179 G P P +A ++R Q + P G L +Q+ + E + PE Sbjct: 149 GGLLP-PDWLDGELIANALRAVSRDNPQLLLGYGTPQGFLPLRQQLQLKLAELEIAAAPE 207 Query: 180 EIVVTVGATEAINLCLQAVARPGDTIAVETPTFYAMLHAIERLGMRALEIPTDPQRGLDV 239 +IV+T G T+ ++ + RPGD I V+ P ++ M + LG + + IP G D+ Sbjct: 208 QIVLTTGVTQGLDTVARHFLRPGDVIFVDDPAWFLMFGSFAALGAKVVGIPRLGD-GPDI 266 Query: 240 GVLEERMKTQPVAACMVMPNFQNPLGFQMPDSEKERLVRLAEQHQMPLIENAVYSELYYG 299 L E ++ NP + ++ +++R+AE+H ++E+ +Y +++ G Sbjct: 267 ARLRELAAVHKPKLYVINSVLHNPTSTSLSAAKAFQVLRIAEEHDFVIVEDDIYCDMHPG 326 Query: 300 NA-HPSS-LKNYDREGLVLHCSSFSKSLTSAYRIGW-AMPGRYRAQVEKLKFLNTLATPT 356 +A P++ + D+ V++ FSK+L++ R+G+ A + K L+TL T Sbjct: 327 SAVQPATRIAALDQLQRVIYLGGFSKTLSANLRVGYIATSAELARSLADRKLLSTLTTGE 386 Query: 357 APQRAIAEYLTQGGYERHLRRVRRVFAQQRDMMRHFVLRFFPAGTQVSE-PQGGYVLWVE 415 +R + L++G Y +H RVR RD + + R G V E P G LWV+ Sbjct: 387 IGERVAYKVLSEGHYRKHAERVRARLNGARDKVMRQLERL---GMDVVEAPPCGMFLWVD 443 Query: 416 LPQRVDAMELYRRSLALGITVAPGRIFAATNRYSHFIRLNYS 457 + + M ++ G +APG +F+ S ++R+N + Sbjct: 444 TGRDTNVMT--EAAMQEGFLLAPGSLFSPAQLPSTYMRINVA 483 >gi|300311139|ref|YP_003775231.1| MocR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 398 Score = 137 bits (344), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 96/371 (25%), Positives = 170/371 (45%), Gaps = 12/371 (3%) Query: 92 WQESTEVDV--SRLVLATLKTIQQDGTVPLGSPYPNPALFPSHRLAQYAGRIARHASQSS 149 WQ S D S + LK + P+P FP + R+ + + Sbjct: 11 WQFSQRADAMKSSAIREILKVTMRPDITSFAGGLPSPLTFPVEHMKTAFDRVLSQQGKMA 70 Query: 150 VFDDLPPGHPDLLRQIARRYLENGLKVDPEEIVVTVGATEAINLCLQAVARPGDTIAVET 209 + G+ L IA NG ++ E++++ G+ + ++L + + G + VET Sbjct: 71 LQYGPTDGYLPLREWIAASLSTNGAQISAEQVLMVSGSQQGLDLLGKVLIDEGSKVLVET 130 Query: 210 PTFYAMLHAIERLGMRALEIPTDPQRGLDVGVLEERMKTQPVAACMV--MPNFQNPLGFQ 267 P++ L A G + +P+D + G+ E ++ A M+ +PNFQNP G Sbjct: 131 PSYLGALQAFALYGAKFESVPSD-----EFGLQPETIEAIAGGARMLYSLPNFQNPTGRT 185 Query: 268 MPDSEKERLVRLAEQHQMPLIENAVYSELYYGNAHPSSLKNYDREGLVLHCSSFSKSLTS 327 +P + +LV + +PLIE+ Y L Y NA + + + G V++ SFSK LT Sbjct: 186 LPTERRFKLVETCARLGLPLIEDDPYGALSYQNAPLPKMLSMNPSG-VIYMGSFSKVLTP 244 Query: 328 AYRIGWAMPGR-YRAQVEKLKFLNTLATPTAPQRAIAEYLTQGGYERHLRRVRRVFAQQR 386 R+G+ + R ++E+ K L T Q + E + G ++H+ +R+++ Q Sbjct: 245 GIRLGYVVAPRPLILKMEQAKQATDLHTAQLTQMVVYEAIKDGFLDQHVPTIRKLYGDQC 304 Query: 387 DMMRHFVLRFFPAGTQVSEPQGGYVLWVELPQRVDAMELYRRSLAL-GITVAPGRIFAAT 445 M + ++FPA S+P+GG +WV LP+ +DA L ++ + PG F A Sbjct: 305 QAMLDALQQYFPASCSWSKPEGGMFIWVTLPEHIDAGALLNEAVEQEKVAFVPGAPFYAN 364 Query: 446 NRYSHFIRLNY 456 + +RL++ Sbjct: 365 VAQKNTLRLSF 375 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.134 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,562,169 Number of extensions: 67200 Number of successful extensions: 252 Number of sequences better than 1.0e-08: 14 Number of HSP's gapped: 227 Number of HSP's successfully gapped: 14 Length of query: 477 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 388 Effective length of database: 1,198,455 Effective search space: 465000540 Effective search space used: 465000540 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)