BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0142.p (300 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311757|ref|YP_003775849.1| transcription regulator protein... 161 8e-41 gi|300311139|ref|YP_003775231.1| MocR family transcription regul... 72 5e-14 gi|300312133|ref|YP_003776225.1| transcription regulator protein... 70 1e-13 gi|300312337|ref|YP_003776429.1| transcription regulator protein... 63 4e-11 gi|300310416|ref|YP_003774508.1| MocR family transcription regul... 62 4e-11 >gi|300311757|ref|YP_003775849.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 441 Score = 161 bits (407), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 99/292 (33%), Positives = 149/292 (51%), Gaps = 11/292 (3%) Query: 1 VLVTPGAQCALLAILTMLVGPGGVLCCEDVTYPGLRALAGHLNIKLVGLPMDNEGIDAVA 60 VL PGAQ AL A++ PG V+ E + YPGL +A HL +++ + +D+EG+ Sbjct: 134 VLACPGAQSALAALVLSQTRPGEVILAEPLAYPGLLTVAAHLGRRVMAVDVDDEGMRPDL 193 Query: 61 FAGACAQYAPKALYCNPTLLNPTTCTTSLSRRQALVDIARHYEVAIIEDDAYGFLPRAAP 120 ++ + +Y NPTL NPTT T +RR + +A ++ IIEDD Y AP Sbjct: 194 LMTMARRHQARLVYLNPTLQNPTTRTMPATRRAEIAALATRLDLRIIEDDPYWRFAAHAP 253 Query: 121 PAIASIGSELTYYVTGLAKSVGAGLRIAYMVAPDAAAAARLTAALRATTVMASPLTSTLA 180 +A +YV+ L+K + GLR AY++ P+ A + ALR+ +M++PL + L+ Sbjct: 254 RPLAHYAPGHVFYVSTLSKCLLPGLRTAYVLMPERQAQEEVLGALRSFVLMSTPLMTALS 313 Query: 181 THWIRDGVADLALANIRKESMARQKIVARILPEHSYASEAEAFHLWLKLPGGWQASSFSA 240 T WI DG A L IR E+ AR ++ R L + S HLW LP WQ F Sbjct: 314 TQWIHDGTAATLLEGIRSEAWARHELALRTL-GGAGLSAGGGIHLWKALPAHWQGQEFVL 372 Query: 241 QMRSNGVAVVGVDAFSVTAAPLQA----------VRVCIGGIASRSDLQHAL 282 + R G+ VV +F+V + +R+ +G SR +L +AL Sbjct: 373 KARQAGLNVVSQSSFAVPPEGREPGADSGGQGACIRISLGRSRSRFELVNAL 424 >gi|300311139|ref|YP_003775231.1| MocR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 398 Score = 72.0 bits (175), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 71/243 (29%), Positives = 110/243 (45%), Gaps = 22/243 (9%) Query: 1 VLVTPGAQCALLAILTMLVGPGGVLCCEDVTYPG-LRALAGHLNIKLVGLPMDN-----E 54 VL+ G+Q L + +L+ G + E +Y G L+A A + K +P D E Sbjct: 102 VLMVSGSQQGLDLLGKVLIDEGSKVLVETPSYLGALQAFALY-GAKFESVPSDEFGLQPE 160 Query: 55 GIDAVAFAGACAQYAPKALYCNPTLLNPTTCTTSLSRRQALVDIARHYEVAIIEDDAYGF 114 I+A+A GA + LY P NPT T RR LV+ + +IEDD YG Sbjct: 161 TIEAIA-GGA------RMLYSLPNFQNPTGRTLPTERRFKLVETCARLGLPLIEDDPYGA 213 Query: 115 LP-RAAP-PAIASIGSELTYYVTGLAKSVGAGLRIAYMVAPDAAAAARLTAALRATTVMA 172 L + AP P + S+ Y+ +K + G+R+ Y+VAP ++ A +AT + Sbjct: 214 LSYQNAPLPKMLSMNPSGVIYMGSFSKVLTPGIRLGYVVAP-RPLILKMEQAKQATDLHT 272 Query: 173 SPLTSTLATHWIRDGVADLALANIRK----ESMARQKIVARILPEHSYASEAE-AFHLWL 227 + LT + I+DG D + IRK + A + + P S+ E +W+ Sbjct: 273 AQLTQMVVYEAIKDGFLDQHVPTIRKLYGDQCQAMLDALQQYFPASCSWSKPEGGMFIWV 332 Query: 228 KLP 230 LP Sbjct: 333 TLP 335 >gi|300312133|ref|YP_003776225.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 491 Score = 70.5 bits (171), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 76/284 (26%), Positives = 116/284 (40%), Gaps = 22/284 (7%) Query: 1 VLVTPGAQCAL-LAILTMLVGPGGVLCCEDVTYPGLRALAGHL---NIKLVGLPMDNEGI 56 VL T GA A+ L +++ L PG + +D PG L L + +VG+ D +G Sbjct: 194 VLTTLGATDAINLIVMSYLRQPGMTVLVDD---PGSFLLMERLLASGMHIVGVARDADGP 250 Query: 57 DAVAFAGACAQYAPKALYCNPTLLNPTTCTTSLSRRQALVDIARHYEVAIIEDDAYGFL- 115 D A AC Q+ P +C L +P S R ++ +A + I+EDD YG L Sbjct: 251 DITALQNACEQHGPTFYFCQSLLHSPGYTGLSPQRAFQILRLAERFNFTIVEDDTYGDLA 310 Query: 116 PRAAPPAIASIGS----ELTYYVTGLAKSVGAGLRIAYMVAPDAAAAARLTAAL--RAT- 168 P P + S + YV +K++GAG+R ++ L L RA+ Sbjct: 311 PAHRSPHATRLASLDQLQHVLYVGSFSKTLGAGMRAGFIAGNPQQIEWLLLYKLVSRASN 370 Query: 169 -TVMASPLTSTLATHWIRDGVADL--ALANIRKESMARQKIVARILPEHSYASEAEAFHL 225 ++ + L+ R L L R MA + + +LP A +L Sbjct: 371 GSLAERAIYRLLSEGGYRRHCEQLRTRLDQARPRLMAALEALGIVLPHRPDA----GLYL 426 Query: 226 WLKLPGGWQASSFSAQMRSNGVAVVGVDAFSVTAAPLQAVRVCI 269 W KLPG A + +M +NG FS A +R + Sbjct: 427 WGKLPGDLNAMEVAERMLANGYLTAPGPVFSSGQAARSYMRFNV 470 >gi|300312337|ref|YP_003776429.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 469 Score = 62.8 bits (151), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 74/155 (47%), Gaps = 8/155 (5%) Query: 1 VLVTPGAQCALLAILTMLVGPGGVLCCEDVTYPGLRALAGHLNI---KLVGLPMDNEGID 57 +++T GA AL ++ + PG + ++ PG L G L + +++G+P +G D Sbjct: 171 IVLTHGANQALDIVIRHFIRPGDRVLVDE---PGYYMLYGKLKLSGARIIGIPRLPDGPD 227 Query: 58 AVAFAGACAQYAPKALYCNPTL-LNPTTCTTSLSRRQALVDIARHYEVAIIEDDAYGFLP 116 + L+ +L NPT TS + ++ +A Y+ I+E+DA+ Sbjct: 228 VAVLERELHRPGKPPLFFTQSLAHNPTASDTSPHKAHRILQLADRYQAIIVENDAFADFK 287 Query: 117 RAAPPAIASIGS-ELTYYVTGLAKSVGAGLRIAYM 150 A P IA++ T YV +KSV A LR+ ++ Sbjct: 288 PATAPRIATLDQLRRTVYVGSFSKSVSAALRVGFI 322 >gi|300310416|ref|YP_003774508.1| MocR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 516 Score = 62.4 bits (150), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 80/164 (48%), Gaps = 10/164 (6%) Query: 1 VLVTPGAQCALLAILTMLVGPGGVLCCEDVTYPGLRALAGHLNIKLVGLPMDNEGIDAVA 60 VL+T G +L ++ +L G ED Y G R++ L I+ V + +D EG+ Sbjct: 219 VLITTGIHQSLDIVVKLLGEHGDSAWVEDPCYWGTRSVLNSLGIQSVPIAVDQEGMRMRL 278 Query: 61 FAGACAQYAPKALYCNPTLLNPTTCTTSLSRRQALVDIARHYEVAIIEDD-----AYGFL 115 A + P+ + P+ P SLSRR+ L++ A ++V IIEDD YG Sbjct: 279 ---ANLRRPPRFICTTPSHQYPLGMVMSLSRRRMLLEYAATHKVWIIEDDYDSEFRYGGR 335 Query: 116 PRAAPPAIASIGSELTYYVTGLAKSVGAGLRIAYMVAPDAAAAA 159 P A+ + + + Y+ +K + GLRI ++V P++ A A Sbjct: 336 PLASLQGMDT--QDRVLYMGTFSKIMFPGLRIGFLVVPESLARA 377 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.133 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 885,657 Number of extensions: 33403 Number of successful extensions: 174 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 166 Number of HSP's successfully gapped: 9 Length of query: 300 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 215 Effective length of database: 1,217,395 Effective search space: 261739925 Effective search space used: 261739925 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)