BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0135.p (278 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310303|ref|YP_003774395.1| sugar ABC transporter permease ... 542 e-155 gi|300309783|ref|YP_003773875.1| sugar ABC transporter permease ... 123 2e-29 gi|300312637|ref|YP_003776729.1| sugar ABC transporter permease ... 117 1e-27 gi|300312692|ref|YP_003776784.1| sugar ABC transporter permease ... 110 1e-25 gi|300309612|ref|YP_003773704.1| sugar ABC transporter permease ... 83 2e-17 >gi|300310303|ref|YP_003774395.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 272 Score = 542 bits (1397), Expect = e-155, Method: Compositional matrix adjust. Identities = 268/272 (98%), Positives = 270/272 (99%) Query: 7 MNKTQDKTLTRTLVMLVYIAFTLVPLYWLLNTSLKTNEETLSVFTLWPNAPTLNNYKTIF 66 MN TQDK+LTR LVML+YIAFTLVPLYWLLNTSLKTNEETLSVFTLWPNAPTLNNYKTIF Sbjct: 1 MNNTQDKSLTRLLVMLLYIAFTLVPLYWLLNTSLKTNEETLSVFTLWPNAPTLNNYKTIF 60 Query: 67 TDPSWYSGYINSIIYVAMNTVMSLLVALPAAYAFSRYRFLGDKHMFFWLLTNRMTPPAVF 126 TDPSWYSGYINSIIYVAMNTVMSLLVALPAAYAFSRYRFLGDKHMFFWLLTNRMTPPAVF Sbjct: 61 TDPSWYSGYINSIIYVAMNTVMSLLVALPAAYAFSRYRFLGDKHMFFWLLTNRMTPPAVF 120 Query: 127 LLPFFQLYSTIGLSDTHIAVALAHMLFNVPLAVWILEGFMSGVPREIDETAYIDGFSFPR 186 LLPFFQLYSTIGLSDTHIAVALAHMLFNVPLAVWILEGFMSGVPREIDETAYIDGFSFPR Sbjct: 121 LLPFFQLYSTIGLSDTHIAVALAHMLFNVPLAVWILEGFMSGVPREIDETAYIDGFSFPR 180 Query: 187 FFLRIFLPLIKSGVGVTAFFCFMFSWVELLLARTLTSVNAKPISAIMTRTASAAGMDWGI 246 FFLRIFLPLIKSGVGVTAFFCFMFSWVELLLARTLTSVNAKPISAIMTRTASAAGMDWGI Sbjct: 181 FFLRIFLPLIKSGVGVTAFFCFMFSWVELLLARTLTSVNAKPISAIMTRTASAAGMDWGI 240 Query: 247 LAAAGVLTIVPGALVIWFVRNHIAKGFAMGRV 278 LAAAGVLTIVPGALVIWFVRNHIAKGFAMGRV Sbjct: 241 LAAAGVLTIVPGALVIWFVRNHIAKGFAMGRV 272 >gi|300309783|ref|YP_003773875.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 271 Score = 123 bits (308), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 80/251 (31%), Positives = 136/251 (54%), Gaps = 8/251 (3%) Query: 31 PLYWLLNTSLKTNEE--TLSVFTLWPNAPTLNNYKTIFTDPSWYSGYI-NSIIYVAMNTV 87 P++W+ T+ KT + T S+ L PTL ++ +F+ S Y GY+ NS+I +T+ Sbjct: 25 PIFWVAVTAFKTESQAYTPSLVFL----PTLETFREVFSR-SHYLGYVQNSLIVSLGSTL 79 Query: 88 MSLLVALPAAYAFSRYRFLGDKHMFFWLLTNRMTPPAVFLLPFFQLYSTIGLSDTHIAVA 147 +SLL+A+PAAY+ + + + + W+L+ +M P L+P + + GL DT + Sbjct: 80 LSLLLAVPAAYSMAFFPTGRTQKLLLWMLSTKMMPAVGVLIPIYLMAKNTGLLDTVTGLT 139 Query: 148 LAHMLFNVPLAVWILEGFMSGVPREIDETAYIDGFSFPRFFLRIFLPLIKSGVGVTAFFC 207 + + L N+P+AVW+ + + VP+EI E A IDG + + + + LP G+ TA Sbjct: 140 IIYTLINLPIAVWMAFTYFNDVPKEILEAARIDGANAWQEMIYLLLPTAMPGLASTALLL 199 Query: 208 FMFSWVELLLARTLTSVNAKPISAIMTRTASAAGMDWGILAAAGVLTIVPGALVIWFVRN 267 + SW E + LTSVNA P++ + ++ G+ W L+AA +L I P + W + Sbjct: 200 VILSWNEAFWSLNLTSVNAAPLTVFIASYSNPEGLFWAKLSAASLLAIAPIMALGWLAQK 259 Query: 268 HIAKGFAMGRV 278 + +G G V Sbjct: 260 QLVRGLTFGAV 270 >gi|300312637|ref|YP_003776729.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 293 Score = 117 bits (292), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 76/245 (31%), Positives = 119/245 (48%), Gaps = 6/245 (2%) Query: 33 YWLLNTSLKTNEETLSVFT--LWPNAPTLNNYKTIFTDPSWYSGYINSIIYVAMNTVMSL 90 YW++ T+ K + E LS W APTL ++K + D + + +N++I ++T SL Sbjct: 43 YWMVITAFKPDNELLSQSGNPFWVIAPTLAHFKKLLFDTQYPAWLLNTVIVSVVSTFASL 102 Query: 91 LVALPAAYAFSRYRFLGDKHMFFWLLTNRMTPPAVFLLPFFQLYSTIGLSDTHIAVALAH 150 ++ AAYA R RF G K + + + PP++ +P + +GL DT A+ L + Sbjct: 103 AASVFAAYAIERLRFQGSKQVGLGIFLAYLIPPSILFIPLAAIVFKLGLFDTRWALILTY 162 Query: 151 MLFNVPLAVWILEGFMSGVPREIDETAYIDGFSFPRFFLRIFLPLIKSGVGVTAFFCFMF 210 F +P W+L G+ +P E++E A IDG + ++I LPL G+ F F Sbjct: 163 PTFLIPFCTWLLMGYFRSIPYELEECALIDGATRWEILVKIILPLAVPGLISAGIFAFTL 222 Query: 211 SWVELLLARTLTS---VNAKPISAIMTRTASAAGMDWGILAAAGVLTIVPGALVIWFVRN 267 SW E + A T S V P+ I+T WG L A +L +P A+V F Sbjct: 223 SWNEFIYALTFISSSEVKTVPV-GIVTELVEGDVYHWGALMAGALLGSLPVAVVYSFFVE 281 Query: 268 HIAKG 272 + G Sbjct: 282 YYVSG 286 >gi|300312692|ref|YP_003776784.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 270 Score = 110 bits (275), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 73/250 (29%), Positives = 123/250 (49%), Gaps = 4/250 (1%) Query: 12 DKTLTRTLVMLVYIAFTLV---PLYWLLNTSLKTNEETLSVFTLWPNAPTLNNYKTIFTD 68 + +TR V V I LV PL W L S+KT + ++ + PTL NY+ + Sbjct: 2 GRLITRCAVWGVGIVLVLVAVFPLLWALLNSVKTLLDIVTPTPRFLFTPTLENYRQVIGS 61 Query: 69 PSWYSGYINSIIYVAMNTVMSLLVALPAAYAFSRYRFLGDKHMFFWLLTNRMTPPAVFLL 128 P G NS + V ++ + +PAAY +RY G + + F+LL+ R PP + Sbjct: 62 PEVLVGLTNSAVIVGSAVLLGTFMGVPAAYVIARYHVPGKRDIQFFLLSLRFLPPVAVAI 121 Query: 129 PFFQLYSTIGLSDTHIAVALAHMLFNVPLAVWILEGFMSGVPREIDETAYIDGFSFPRFF 188 P ++ +GL DT ++ + ++L + W+ +PREI+E A +DG+ F Sbjct: 122 PLIAIWVDLGLYDTRFSMIVTYLLTTLSTITWLSIPVFQRMPREIEEAATLDGYGPYAVF 181 Query: 189 LRIFLPLIKSGVGVTAFFCFMFSWVELLLARTLTSVNAKPISAIMTR-TASAAGMDWGIL 247 +I LP + + F F+ W EL++A LTS N+ + + + T+ + WG++ Sbjct: 182 WKIALPNCATTLLGGIIFSFVLVWNELMIALALTSSNSATLPVVASAFTSMGQEVPWGVI 241 Query: 248 AAAGVLTIVP 257 A+ VL +P Sbjct: 242 NASTVLLALP 251 >gi|300309612|ref|YP_003773704.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 283 Score = 83.2 bits (204), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 62/251 (24%), Positives = 112/251 (44%), Gaps = 3/251 (1%) Query: 29 LVPLYWLLNTSLKTNEETLSV-FTLWPNA-PTLNNYKTIFTDPSWYSGYINSIIYVAMNT 86 L+P+ L TS+++N+E ++ + WP L NY+ T + NS + + Sbjct: 29 LLPMLAALVTSIRSNDELMAGNYWGWPQDFAMLENYREALTASPMLHYFWNSCLITIPSV 88 Query: 87 VMSLLVALPAAYAFSRYRFLGDKHMFFWLLTNRMTPPAVFLLPFFQLYSTIGLSDTHIAV 146 + ++ +A A +A S Y+F G+ +F + P + ++P L ++GL +T + Sbjct: 89 IGAISLAAMAGFALSTYQFRGNTVLFATFVACNFVPQQILMIPVRDLSLSLGLFNTITGM 148 Query: 147 ALAHMLFNVPLAVWILEGFMSGVPREIDETAYIDGFSFPRFFLRIFLPLIKSGVGVTAFF 206 L H+ L F+ +P E+ E A I+G S F RI LPLI+ + A Sbjct: 149 MLFHIAMQTGFCTLFLRNFIKQLPFEMIEAARIEGASEWTVFYRIVLPLIRPALAALAVL 208 Query: 207 CFMFSWVELLLARTLTS-VNAKPISAIMTRTASAAGMDWGILAAAGVLTIVPGALVIWFV 265 F F W + A LT + PI+ + W +++A +L +P ++ + + Sbjct: 209 VFTFVWNDYFWALVLTQGDDVAPITVGVAALRGQWTTAWNLVSAGSILAALPSVILFFVM 268 Query: 266 RNHIAKGFAMG 276 + G G Sbjct: 269 QKQFVAGLTFG 279 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.329 0.140 0.440 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 810,927 Number of extensions: 30493 Number of successful extensions: 135 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 125 Number of HSP's successfully gapped: 9 Length of query: 278 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 194 Effective length of database: 1,222,130 Effective search space: 237093220 Effective search space used: 237093220 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)