BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0134.p (296 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310302|ref|YP_003774394.1| sugar ABC transporter permease ... 563 e-162 gi|300312691|ref|YP_003776783.1| sugar ABC transporter permease ... 91 1e-19 gi|300309782|ref|YP_003773874.1| sugar ABC transporter permease ... 85 8e-18 gi|300312636|ref|YP_003776728.1| sugar ABC transporter permease ... 83 3e-17 gi|300313088|ref|YP_003777180.1| sn-glycerol-3-phosphate ABC tra... 80 3e-16 >gi|300310302|ref|YP_003774394.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 296 Score = 563 bits (1452), Expect = e-162, Method: Compositional matrix adjust. Identities = 288/296 (97%), Positives = 294/296 (99%) Query: 1 MNKPYNNKAWFFILPVFLTVAFSAIIPLMTVVNYSVQDIISPEQKVFVGLDWFRDVMRDS 60 MNKPYNNKAWFFILPVFLTVAFSAIIPLMTVVNYSVQDIISPEQKVFVGLDWFR+VMRD Sbjct: 1 MNKPYNNKAWFFILPVFLTVAFSAIIPLMTVVNYSVQDIISPEQKVFVGLDWFREVMRDG 60 Query: 61 ELHAALLRQLIFSFCVLLVQLPLGIGLALAMPHKGWKSSATLVILAMPLLIPWNVVGTIW 120 ELHAALLRQLIFSFCVLLVQ+PLGIGLALAMPHKGWKSSATLVILAMPLLIPWNVVGTIW Sbjct: 61 ELHAALLRQLIFSFCVLLVQIPLGIGLALAMPHKGWKSSATLVILAMPLLIPWNVVGTIW 120 Query: 121 QIFGRGDIGLGGHVLNLLGVDYNYASNPLDAWLTVLLMDVWHWTPLVALLAFAGLRSIPD 180 QIFGR DIGLGG+VLNLLG+DYNYASNPLDAWLTVLLMDVWHWTPLVALLAFAGLRSIPD Sbjct: 121 QIFGRADIGLGGYVLNLLGIDYNYASNPLDAWLTVLLMDVWHWTPLVALLAFAGLRSIPD 180 Query: 181 AYYQAAQIDGASRWAVFRFIQLPKMRGVLVIAVLLRFMDSFMIYTEPFVLTGGGPGNSTT 240 AYYQAAQIDGASRWAVFR+IQLPKMRGVLVIAVLLRFMDSFMIYTEPFVLTGGGPGNSTT Sbjct: 181 AYYQAAQIDGASRWAVFRYIQLPKMRGVLVIAVLLRFMDSFMIYTEPFVLTGGGPGNSTT 240 Query: 241 FLSQYLTQKAVGQFDLGPAAAFSLIYFLIILLLSFVLYNWMQSAGNNANASGGQHE 296 FLSQYLTQKAVGQFDLGPAAAFSLIYFLIILLLSFVLYNWMQSAGN+ANASGGQHE Sbjct: 241 FLSQYLTQKAVGQFDLGPAAAFSLIYFLIILLLSFVLYNWMQSAGNHANASGGQHE 296 >gi|300312691|ref|YP_003776783.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 292 Score = 90.5 bits (223), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 65/256 (25%), Positives = 126/256 (49%), Gaps = 6/256 (2%) Query: 2 NKPYNNKAWFFILPVFLTVAFSAIIPLMTVVNYSVQD-IISPEQKVFVGLDWFRDVMRDS 60 N+ + + F+ P L + ++P + +N ++++ ++ +V L +M D Sbjct: 3 NRGKTSLPYLFLGPSLLVMLVLGLVPTVAAINLALKNRVLRYPDSDYVWLRNLERLMSDR 62 Query: 61 ELHAALLRQLIFSFCVLLVQLPLGIGLALAM---PHKGWKSSATLVILAMPLLIPWNVVG 117 A+ ++ +L + +GI +A+ + H W+ A V+L P+L+P Sbjct: 63 RFLNAIEVSAVWEVVTVLGAVIVGIAIAVYLFENVHGKWRQ-AMCVLLITPVLLPRVSAA 121 Query: 118 TIWQIFGRGDIGLGGHVLNLLGV-DYNYASNPLDAWLTVLLMDVWHWTPLVALLAFAGLR 176 IW+ G+ G +L L+G+ D + S+P A V L+D+W W A++ L Sbjct: 122 FIWKFMYSPLTGILGWLLGLVGIHDTAFLSDPALALYAVALVDIWQWGLFFAVIVLKLLE 181 Query: 177 SIPDAYYQAAQIDGASRWAVFRFIQLPKMRGVLVIAVLLRFMDSFMIYTEPFVLTGGGPG 236 ++P +AA++D A W V+ +I LP ++G L+ V ++ ++S + +V+T GGPG Sbjct: 182 TLPPEPLEAARLDYARTWQVYAYIALPMLKGPLISLVFIKMVESLRSFDLIYVMTKGGPG 241 Query: 237 NSTTFLSQYLTQKAVG 252 +T L Y + +G Sbjct: 242 VATETLDMYAYAQGIG 257 >gi|300309782|ref|YP_003773874.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 324 Score = 84.7 bits (208), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 69/263 (26%), Positives = 131/263 (49%), Gaps = 18/263 (6%) Query: 25 IIPLMTVVNYSVQ--DIISPEQKVFVGLDWFRDVMRDSELHAALLRQLIFSFCVLLVQLP 82 I+PL + +SV ++++P+Q FVGL+ + +++D ++ + VL + + Sbjct: 56 IVPLAMTIYFSVNRYNLMAPDQTGFVGLENYAFLLQDPAFWPSIGNTALLIGSVLAISVI 115 Query: 83 LGIGLAL--AMPHKGWKSSATLVILAMPLLIPWNVVGTIWQ-IFGRGDIGLGGHVLNLLG 139 G LA+ P +G + LVI P + V IW+ + G+ +V+ LG Sbjct: 116 GGTLLAVLFDQPFRGRGIARLLVI--GPFFVMPTVAALIWKNMIMHPVYGILAYVMRHLG 173 Query: 140 VDYNYASNPLD-----AWLTVLLMDVWHWTPLVALLAFAGLRSIPDAYYQAAQIDGASRW 194 ++ P+D L+V+++ W W P L+ L+S+ +AAQ+DGA Sbjct: 174 LE------PIDWLAEYPMLSVIIIVAWQWIPFAFLILLTALQSLDTDQKEAAQLDGAGPV 227 Query: 195 AVFRFIQLPKMRGVLVIAVLLRFMDSFMIYTEPFVLTGGGPGNSTTFLSQYLTQKAVGQF 254 +F +I LP ++ + + +++ + ++ E F T GGPG +TT L+ + + QF Sbjct: 228 RIFFYIVLPHLKRAITVVIMIETIFLLSVFAEIFTTTAGGPGTATTNLTFLVYSIGLQQF 287 Query: 255 DLGPAAAFSLIYFLIILLLSFVL 277 D+G A+A + ++ ++SF L Sbjct: 288 DIGIASAGGIFAVVLANIVSFFL 310 >gi|300312636|ref|YP_003776728.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 299 Score = 82.8 bits (203), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 61/240 (25%), Positives = 120/240 (50%), Gaps = 5/240 (2%) Query: 44 QKVFVGLDWFRDVMRDSELHAALLRQLIFSFCVLLVQLPLGIGLALAMPHKGWKSSATLV 103 + F+GLD F + DS +L + ++ +++ LG+ LA+ + + Sbjct: 48 EGSFIGLDNFTYLAGDSLAQLSLFNTVFYTVSASILKFMLGLWLAILLNKNVPLKTFFRA 107 Query: 104 ILAMPLLIPWNVVG-TIWQIFGR--GDIGLGGHVLNLLGVDYNYASNPLDAWLTVLLMDV 160 I+ +P ++P + W ++ I H + L+ ++ +P +A + + +V Sbjct: 108 IVLLPWIVPTALSALAFWWLYDAQFSVISWALHKMGLIDRYIDFLGDPWNARWSTVFANV 167 Query: 161 WHWTPLVALLAFAGLRSIPDAYYQAAQIDGASRWAVFRFIQLPKMRGVLVIAVLLRFMDS 220 W P VA+ AGL++I + Y+AA IDGA+ W FR + LP + ++ + + + + Sbjct: 168 WRGIPFVAISLLAGLQTISPSLYEAAAIDGATPWQQFRHVTLPLLTPIIAVVMTFSVLFT 227 Query: 221 FMIYTEPFVLTGGGPGNSTTFLSQYLTQKAVGQFDLGPAAAFSLIYFLIILLLSFVLYNW 280 F + +VLT GGP N+T ++ Q+A+ LG AA L ++I LL+ +++++ Sbjct: 228 FTDFQLIYVLTRGGPLNATHLMATLSFQRAIPGGALGEGAA--LATYMIPFLLAAIMFSY 285 >gi|300313088|ref|YP_003777180.1| sn-glycerol-3-phosphate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 294 Score = 79.7 bits (195), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 70/248 (28%), Positives = 110/248 (44%), Gaps = 11/248 (4%) Query: 47 FVGLDWFRDVMRDSELHAALLRQLIFSFCVLLVQLPLGIGLALAMPHKGWKSSATLVILA 106 FV D F+ + D + IFS V L L + LA+ +S L Sbjct: 52 FVWFDNFKTLFGDPTYLESFRTTAIFSALVAFFGLALSLLLAVFADRVRRGASIYKTFLI 111 Query: 107 MPLLIPWNVVGTIWQIFGRGDIGLGGHVLNLLGVDYNYASNPLDAWLTVLLMDVWHWTPL 166 P + VVG +W +G+ HVL+ LG+ ++Y N A + +++ +W Sbjct: 112 WPYAVSPVVVGVLWMFLLSPSLGILSHVLSWLGLPWDYMINGTHAMILIVIAAIWKQISY 171 Query: 167 VALLAFAGLRSIPDAYYQAAQIDGASRWAVFRFIQL------PKMRGVLVIAVLLRFMDS 220 L AGL+SIP + +AA IDGA V RF + P + V+ V+ F D+ Sbjct: 172 NFLFFLAGLQSIPKSLIEAAAIDGAG--PVKRFFTIVFPLISPTTFFLFVVNVVYAFFDT 229 Query: 221 FMIYTEPFVLTGGGPGNSTTFLSQYLTQKAVGQFDLGPAAAFSLIYFLIILLLSFVLYNW 280 F+I T GGPG T L + DLG +AA S++ +++LL+ V + + Sbjct: 230 FVIVDAT---THGGPGKDTEILVYKVFSDGFKGGDLGGSAAQSVVLMALVILLTVVQFKY 286 Query: 281 MQSAGNNA 288 ++ A Sbjct: 287 VEKKVQYA 294 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.328 0.142 0.454 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 881,956 Number of extensions: 33870 Number of successful extensions: 180 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 174 Number of HSP's successfully gapped: 10 Length of query: 296 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 211 Effective length of database: 1,217,395 Effective search space: 256870345 Effective search space used: 256870345 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 130 (54.7 bits)