BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0133.p (362 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310301|ref|YP_003774393.1| sugar ABC transporter ATPase [H... 725 0.0 gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [H... 205 5e-54 gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC tra... 203 1e-53 gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [H... 199 3e-52 gi|300312694|ref|YP_003776786.1| sugar ABC transporter ATPase [H... 199 4e-52 >gi|300310301|ref|YP_003774393.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 362 Score = 725 bits (1871), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/362 (96%), Positives = 356/362 (98%) Query: 1 MARIEFKNLGHAYGSNPASLKDYALQPMNMVWEDGGAYALLGPSGCGKSTLLNIISGLLQ 60 MARIEFKNLGHAY NPASLKDYALQPMNMVWEDGGAYALLGPSGCGKSTLLNIISGLLQ Sbjct: 1 MARIEFKNLGHAYSGNPASLKDYALQPMNMVWEDGGAYALLGPSGCGKSTLLNIISGLLQ 60 Query: 61 PSEGQVLFDGRDMTRMATRDRNIAQVFQFPVLYDTMSVFDNLAFPLRNRKIAEREVQARV 120 PSEGQVLFDGRDMTRMATRDRNIAQVFQFPVLYDTMSVFDNLAFPLRNRKIAEREVQARV Sbjct: 61 PSEGQVLFDGRDMTRMATRDRNIAQVFQFPVLYDTMSVFDNLAFPLRNRKIAEREVQARV 120 Query: 121 REIAEMLDLTRDLKQRAAGLSADAKQKISLGRGLVRKDVAAILFDEPLTVIDPHMKWELR 180 REIAEMLDLTRDLKQRAAGLSADAKQKISLGRGLVRKDVAAILFDEPLTVIDPHMKWELR Sbjct: 121 REIAEMLDLTRDLKQRAAGLSADAKQKISLGRGLVRKDVAAILFDEPLTVIDPHMKWELR 180 Query: 181 QKLKEIHHQLKLTLIYVTHDQVEALTFADEVVVMTEGKVVQQGKPEALFLRPDHTFVGYF 240 QKLKEIHHQLKLTLIYVTHDQVEALTFADEVVVMTEGKVVQQGKPEALFLRPDHTFVGYF Sbjct: 181 QKLKEIHHQLKLTLIYVTHDQVEALTFADEVVVMTEGKVVQQGKPEALFLRPDHTFVGYF 240 Query: 241 IGSPGMNFCPVRVEGDAVLLGQQRLQVEAAQLQALKNSSGVLKLGIRPEFVELAAPGTAG 300 IGSPGMNFCPVR+EGDAVLLGQQRLQ+EAAQLQALKNS+G LKLGIRPEFVELAAPG G Sbjct: 241 IGSPGMNFCPVRLEGDAVLLGQQRLQIEAAQLQALKNSNGELKLGIRPEFVELAAPGATG 300 Query: 301 AVSAEVTQVQHLGTSQLVTAQFEGMSVKARVAPELKIATGAQWLRLAKPETIYFSNDERI 360 AVSAE+TQVQHLGTSQLVTAQFEGMSVKAR++PE+KIATG QWLRLAKPETIYFSNDERI Sbjct: 301 AVSAEITQVQHLGTSQLVTAQFEGMSVKARLSPEMKIATGNQWLRLAKPETIYFSNDERI 360 Query: 361 GR 362 GR Sbjct: 361 GR 362 >gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 372 Score = 205 bits (521), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 121/332 (36%), Positives = 192/332 (57%), Gaps = 21/332 (6%) Query: 1 MARIEFKNLGHAYGSNPASLKDYALQPMNMVWEDGGAYALLGPSGCGKSTLLNIISGLLQ 60 MA + +NL Y N ++ +N+ EDG +GPSGCGKSTLL +I+GL + Sbjct: 1 MAAVSIRNLAKRYDDNEV------MRDINLEIEDGEFVVFVGPSGCGKSTLLRMIAGLEE 54 Query: 61 PSEGQVLFDGRDMTRMATRDRNIAQVFQFPVLYDTMSVFDNLAFPLRNRKIAEREVQARV 120 S+G + R M + R +A VFQ LY MS++DN+AF L+ ++ E+ A V Sbjct: 55 ISDGDLDIGARRMNEVPASKRGVAMVFQSYALYPHMSLYDNMAFGLKIAGKSKAEIDAAV 114 Query: 121 REIAEMLDLTRDLKQRAAGLSADAKQKISLGRGLVRKDVAAILFDEPLTVIDPHMKWELR 180 + A++L + L ++ LS +Q++++GR + R+ + LFDEPL+ +D ++ ++R Sbjct: 115 QHAAKILHIDHLLDRKPRALSGGQRQRVAIGRAITRQP-SVFLFDEPLSNLDAALRVKMR 173 Query: 181 QKLKEIHHQLKLTLIYVTHDQVEALTFADEVVVMTEGKVVQQGKPEALFLRPDHTFVGYF 240 + ++H LK T+IYVTHDQ+EA+T AD++VV++EG++ Q G P+ L+ P + FV F Sbjct: 174 LEFAKLHDDLKTTMIYVTHDQIEAMTLADKIVVLSEGRIEQVGSPQQLYHHPANRFVAGF 233 Query: 241 IGSPGMNF-----CPVRVEGDAVLL---GQQRLQVEAAQLQALKNSSGVLKLGIRPEFVE 292 IGSP MNF ++ +G V L G Q V+ + LQ + + LG+RPE + Sbjct: 234 IGSPKMNFIDGTVAAIQADGVQVQLPGGGLQWAAVDGSTLQVGQK----VTLGVRPEHLN 289 Query: 293 LAAPGTAGAVSAEVTQVQHLGTSQLVTAQFEG 324 +A G A A+ A T ++ LG + A +EG Sbjct: 290 IAQ-GQA-ALQARCTALELLGDFSYLYAAYEG 319 >gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 364 Score = 203 bits (517), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 121/355 (34%), Positives = 197/355 (55%), Gaps = 30/355 (8%) Query: 1 MARIEFKNLGHAYGSNPASLKDYALQPMNMVWEDGGAYALLGPSGCGKSTLLNIISGLLQ 60 MA I K + YG+ ++ + ++ DG ++GPSGCGKSTLL +++GL + Sbjct: 1 MAAIHLKQVRKTYGAGTKAVD--VIHGIDAEIADGEFIVMVGPSGCGKSTLLRMVAGLEE 58 Query: 61 PSEGQVLFDGRDMTRMATRDRNIAQVFQFPVLYDTMSVFDNLAFPLRNRKIAEREVQARV 120 S GQ++ R + + ++R+IA VFQ LY M+V+ N+A+ L+ + +++ E+ ARV Sbjct: 59 ISSGQIVIGDRVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGLSKSEIDARV 118 Query: 121 REIAEMLDLTRDLKQRAAGLSADAKQKISLGRGLVRKDVAAILFDEPLTVIDPHMKWELR 180 + A +L+L L++ LS +Q++++GR +VRK A LFDEPL+ +D ++ ++R Sbjct: 119 QRAAAILELGALLERTPRQLSGGQRQRVAMGRAIVRKP-AVFLFDEPLSNLDAKLRVQMR 177 Query: 181 QKLKEIHHQLKLTLIYVTHDQVEALTFADEVVVMTEGKVVQQGKPEALFLRPDHTFVGYF 240 +++++H L+ T +YVTHDQVEA+T ++VM G Q G P ++ RP TFV F Sbjct: 178 LEIQKLHASLRTTSLYVTHDQVEAMTLGQRMIVMNRGVAEQIGTPAEVYARPATTFVASF 237 Query: 241 IGSPGMNFCPVRVEGDAVLLGQQRLQVEAAQLQALK-NSSGVLK--------------LG 285 IGSP MN Q +L + A + K N+S +L+ LG Sbjct: 238 IGSPPMNLL------------QGKLSADGASFEVSKGNASDILRLPQPLTGAAGQERILG 285 Query: 286 IRPEFVELAAPGTAGAVSAEVTQVQHLGTSQLVTAQFEGMSVKARVAPELKIATG 340 +RPE + G+A +S EV V+ LG LV A+ G ++ R +++ TG Sbjct: 286 VRPEHLLPILDGSAAQLSLEVELVEALGAELLVHARCGGQALVLRCPANVQVRTG 340 >gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 199 bits (507), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 120/333 (36%), Positives = 194/333 (58%), Gaps = 13/333 (3%) Query: 1 MARIEFKNLGHAYGSNPASLKDYALQPMNMVWEDGGAYALLGPSGCGKSTLLNIISGLLQ 60 MA ++ + + +GS ++ +++ DG L+GPSGCGKSTLL +++GL + Sbjct: 1 MASVQIRAVKKQFGST------QIIRGVDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEE 54 Query: 61 PSEGQVLFDGRDMTRMATRDRNIAQVFQFPVLYDTMSVFDNLAFPLRNRKIAEREVQARV 120 + G++L G + + +DR+IA VFQ LY M+V DN+AF L K + V RV Sbjct: 55 ITGGEILIGGTVVNNVQPKDRDIAMVFQNYALYPHMTVRDNMAFSLTLAKKDKAFVDERV 114 Query: 121 REIAEMLDLTRDLKQRAAGLSADAKQKISLGRGLVRKDVAAILFDEPLTVIDPHMKWELR 180 ++ A++L L + L + LS +Q++++GR +VR D LFDEPL+ +D ++ ++R Sbjct: 115 KKAADILGLNQLLDRYPRQLSGGQRQRVAMGRAIVR-DPQVFLFDEPLSNLDAKLRVQMR 173 Query: 181 QKLKEIHHQLKLTLIYVTHDQVEALTFADEVVVMTEGKVVQQGKPEALFLRPDHTFVGYF 240 ++KE+H +LK T IYVTHDQ+EA+T AD++VVM +G V Q+G+P L+ P + FV F Sbjct: 174 TEIKELHQRLKTTSIYVTHDQIEAMTMADQIVVMRDGLVEQRGRPLDLYDYPANLFVAGF 233 Query: 241 IGSPGMNFCPVRVEGDAV---LLGQQRLQVEAAQLQALKNSSG-VLKLGIRPEFVELAAP 296 IGSP MNF P + +A + +V A AL+ + G + G+RPE + + A Sbjct: 234 IGSPAMNFIPATLRRNATGAEVEFADGTRVPAPYGAALQGNDGQKVTYGVRPEHLSIGAA 293 Query: 297 GTAGAVSAEVTQVQHLGTSQLVTAQFEGMSVKA 329 G ++ +V V+ G V ++F S+ + Sbjct: 294 GQ--GIATKVIVVEPTGADTEVFSRFGDTSLTS 324 >gi|300312694|ref|YP_003776786.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 406 Score = 199 bits (505), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 123/338 (36%), Positives = 187/338 (55%), Gaps = 14/338 (4%) Query: 1 MARIEFKNLGHAYGSNPASLKDYALQPMNMVWEDGGAYALLGPSGCGKSTLLNIISGLLQ 60 MA I + L Y P L P+++ DG LLGPSGCGKST+L +I+GL Sbjct: 1 MADIHCQALAKHYAGGPP-----VLHPLDLHIGDGEFVVLLGPSGCGKSTMLRMIAGLED 55 Query: 61 PSEGQVLFDGRDMTRMATRDRNIAQVFQFPVLYDTMSVFDNLAFPLRNRKIAEREVQARV 120 S G + G + + R+RN+A VFQ LY MSV+DN+AF LR K E+ RV Sbjct: 56 ISGGTLRIGGTVVNDLPARERNVAMVFQNYALYPHMSVYDNIAFGLRRLKRPAAEIDRRV 115 Query: 121 REIAEMLDLTRDLKQRAAGLSADAKQKISLGRGLVRKDVAAILFDEPLTVIDPHMKWELR 180 RE+A +L+L L+++ +S +Q+ ++ R ++ K + LFDEPL+ +D ++ +LR Sbjct: 116 REVAALLNLEALLERKPRAMSGGQQQRAAIARAII-KTPSVFLFDEPLSNLDAKLRAQLR 174 Query: 181 QKLKEIHHQLKLTLIYVTHDQVEALTFADEVVVMTEGKVVQQGKPEALFLRPDHTFVGYF 240 +K +H +L+ T +YVTHDQ+EA+T AD V++M +G++VQ G P L+ P + F F Sbjct: 175 GDIKRLHQRLRTTTVYVTHDQLEAMTLADRVILMQDGRIVQAGSPAELYRYPRNLFAAGF 234 Query: 241 IGSPGMNFCPVRVE-GDAVLL---GQQRLQVEAAQLQALKNSSGVLKLGIRPEFVELAA- 295 IG+P MNF V+ D L QR + + L+++ V KL +RP+ V +A Sbjct: 235 IGTPAMNFLSGTVQRQDGQLFIETAHQRWALTGERFSRLRHAMAV-KLAVRPDHVRIAGE 293 Query: 296 --PGTAGAVSAEVTQVQHLGTSQLVTAQFEGMSVKARV 331 P + V V+ LG L+T + ++ A V Sbjct: 294 REPAASLTCPVSVELVEILGADALLTTRCGDQTLTALV 331 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.136 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,122,238 Number of extensions: 46043 Number of successful extensions: 470 Number of sequences better than 1.0e-08: 124 Number of HSP's gapped: 336 Number of HSP's successfully gapped: 129 Length of query: 362 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 276 Effective length of database: 1,212,660 Effective search space: 334694160 Effective search space used: 334694160 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)