BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0132.p (366 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310300|ref|YP_003774392.1| sugar ABC transporter ATPase [H... 700 0.0 gi|300312386|ref|YP_003776478.1| sugar ABC transporter ATPase [H... 211 6e-56 gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [H... 209 3e-55 gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC tra... 204 8e-54 gi|300312694|ref|YP_003776786.1| sugar ABC transporter ATPase [H... 201 6e-53 >gi|300310300|ref|YP_003774392.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 366 Score = 700 bits (1806), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/366 (95%), Positives = 359/366 (98%) Query: 1 VTLELKQVAKTVGAETHLYPLDLNLAKGGINVLLGPTQAGKTSLMRIIAGLDKPTAGRVL 60 +TLELKQVAKTVGAETHLYPLDLNLAKGGINVLLGPTQAGKTSLMRIIAGLDKPTAGRVL Sbjct: 1 MTLELKQVAKTVGAETHLYPLDLNLAKGGINVLLGPTQAGKTSLMRIIAGLDKPTAGRVL 60 Query: 61 VDGQDVTGVGVRERNLAMVYQQFINYPGLTVFENIAAPLRLQKQPEQEISKRVKEIADKL 120 VDGQDVTGVGVRERNLAMVYQQFINYPGLTVFENIAAPLRLQKQPEQEISKRVKEIADKL Sbjct: 61 VDGQDVTGVGVRERNLAMVYQQFINYPGLTVFENIAAPLRLQKQPEQEISKRVKEIADKL 120 Query: 121 HITHLLQRLPLELSGGQQQRCALARALIKRAPLVLLDEPLVNLDYKLREELRSELISLFA 180 HI HLLQRLP ELSGGQQQRCALARALIKRAPLVLLDEPLVNLDYKLREELRSELISLFA Sbjct: 121 HIAHLLQRLPGELSGGQQQRCALARALIKRAPLVLLDEPLVNLDYKLREELRSELISLFA 180 Query: 181 TGDTTVVYATTEPQEALLLGGHTAVMHEGRLLQFAPTLELFNSPASTRVAAIFNDPPMNL 240 TGDTTVVYATTEPQEALLLGGHTAVMH+GRLLQFAPTLELFNSPAST+VAAIFNDPPMNL Sbjct: 181 TGDTTVVYATTEPQEALLLGGHTAVMHQGRLLQFAPTLELFNSPASTQVAAIFNDPPMNL 240 Query: 241 LDATAISTAHGVAAIRMNDGSVLEIAGRSLSLSEGQPCKLGIRCNDVRLEALSAPGVSLG 300 L+ATAI++A GVAAI M+DGSVLEIAGR L+LSEGQ CKLGIRCNDVRLEAL+ PGVSLG Sbjct: 241 LEATAIASAPGVAAICMSDGSVLEIAGRPLALSEGQSCKLGIRCNDVRLEALTGPGVSLG 300 Query: 301 CSVTLAELSGSETYLHLRHGDVPLVAQLSGVHEVAIGSTVQVSIAAAKAFLFDTQGRLLS 360 CSVTLAELSGSETYLHLRHG+VPLVAQLSGVHEVAIGSTVQVSIAAAKAFLFDTQGRLLS Sbjct: 301 CSVTLAELSGSETYLHLRHGEVPLVAQLSGVHEVAIGSTVQVSIAAAKAFLFDTQGRLLS 360 Query: 361 APLETR 366 AP+ETR Sbjct: 361 APMETR 366 >gi|300312386|ref|YP_003776478.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 349 Score = 211 bits (538), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 128/353 (36%), Positives = 197/353 (55%), Gaps = 17/353 (4%) Query: 3 LELKQVAKTVGAETHLYPLDLNLAKGGINVLLGPTQAGKTSLMRIIAGLDKPTAGRVLVD 62 + L+ V K G + +D + G VLLGP+ GK++ +R+IAGLDKP++G + + Sbjct: 4 ISLQGVCKHWGEAQAVRNIDFEVKAGQFTVLLGPSGCGKSTTLRLIAGLDKPSSGSIHIG 63 Query: 63 GQDVTGVGVRERNLAMVYQQFINYPGLTVFENIAAPLRLQKQPEQEISKRVKEIADKLHI 122 G+DVT + +R ++MV+Q + +P L+V +NI +R++K+P R+K +AD L + Sbjct: 64 GRDVTQLPPAQRKISMVFQSYALFPHLSVRDNILFGVRVRKEPRAGYETRLKRVADILGL 123 Query: 123 THLLQRLPLELSGGQQQRCALARALIKRAPLVLLDEPLVNLDYKLREELRSELISLFATG 182 HLL+R P +LSGGQQQR AL RA+I AP+ L+DEPL NLD +LR+E+R E+ +L Sbjct: 124 AHLLERRPAQLSGGQQQRVALGRAIIADAPVCLMDEPLSNLDAQLRQEMRREIRALQQQL 183 Query: 183 DTTVVYATTEPQEALLLGGHTAVMHEGRLLQFAPTLELFNSPASTRVAAIFNDPPMNLLD 242 + T+VY T + EA+ + ++ EGR+ Q A +L+ PA+ A PPMNLL Sbjct: 184 NMTMVYVTHDQTEAMSMADQVILLREGRIEQDAAPADLYAQPATAFAARFIGTPPMNLLP 243 Query: 243 ATAISTAHGVAAIRMNDGSVLEIAGRSLSLSE-GQ-PCKLGIRCNDVRLEALSAPGVSLG 300 A G L I+G + L + GQ P +LG+R +RL A S+ Sbjct: 244 LE--PHAEG-----------LVISGSDVILRDLGQTPWQLGLRPEHIRLA--DASDSSVP 288 Query: 301 CSVTLAELSGSETYLHLRHGDVPLVAQLSGVHEVAIGSTVQVSIAAAKAFLFD 353 V E G++T + R G L+ + G H + G V+++ A + FD Sbjct: 289 AVVETVEYFGADTIIGARIGAASLLVRAPGQHRLGAGDPVRLAWDARDQYFFD 341 >gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 209 bits (532), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 119/355 (33%), Positives = 200/355 (56%), Gaps = 5/355 (1%) Query: 2 TLELKQVAKTVGAETHLYPLDLNLAKGGINVLLGPTQAGKTSLMRIIAGLDKPTAGRVLV 61 +++++ V K G+ + +D+++A G VL+GP+ GK++L+R++AGL++ T G +L+ Sbjct: 3 SVQIRAVKKQFGSTQIIRGVDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEEITGGEILI 62 Query: 62 DGQDVTGVGVRERNLAMVYQQFINYPGLTVFENIAAPLRLQKQPEQEISKRVKEIADKLH 121 G V V ++R++AMV+Q + YP +TV +N+A L L K+ + + +RVK+ AD L Sbjct: 63 GGTVVNNVQPKDRDIAMVFQNYALYPHMTVRDNMAFSLTLAKKDKAFVDERVKKAADILG 122 Query: 122 ITHLLQRLPLELSGGQQQRCALARALIKRAPLVLLDEPLVNLDYKLREELRSELISLFAT 181 + LL R P +LSGGQ+QR A+ RA+++ + L DEPL NLD KLR ++R+E+ L Sbjct: 123 LNQLLDRYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDAKLRVQMRTEIKELHQR 182 Query: 182 GDTTVVYATTEPQEALLLGGHTAVMHEGRLLQFAPTLELFNSPASTRVAAIFNDPPMNLL 241 TT +Y T + EA+ + VM +G + Q L+L++ PA+ VA P MN + Sbjct: 183 LKTTSIYVTHDQIEAMTMADQIVVMRDGLVEQRGRPLDLYDYPANLFVAGFIGSPAMNFI 242 Query: 242 DATAISTAHGVAAIRMNDGS-VLEIAGRSLSLSEGQPCKLGIRCNDVRLEALSAPGVSLG 300 AT A G A + DG+ V G +L ++GQ G+R + ++ A G + Sbjct: 243 PATLRRNATG-AEVEFADGTRVPAPYGAALQGNDGQKVTYGVRPEHL---SIGAAGQGIA 298 Query: 301 CSVTLAELSGSETYLHLRHGDVPLVAQLSGVHEVAIGSTVQVSIAAAKAFLFDTQ 355 V + E +G++T + R GD L + H+ G + + ++ LFD + Sbjct: 299 TKVIVVEPTGADTEVFSRFGDTSLTSIFRERHDFGAGDVIHLVPDHSRTHLFDAE 353 >gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 364 Score = 204 bits (520), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 124/357 (34%), Positives = 197/357 (55%), Gaps = 6/357 (1%) Query: 3 LELKQVAKTVGAETH----LYPLDLNLAKGGINVLLGPTQAGKTSLMRIIAGLDKPTAGR 58 + LKQV KT GA T ++ +D +A G V++GP+ GK++L+R++AGL++ ++G+ Sbjct: 4 IHLKQVRKTYGAGTKAVDVIHGIDAEIADGEFIVMVGPSGCGKSTLLRMVAGLEEISSGQ 63 Query: 59 VLVDGQDVTGVGVRERNLAMVYQQFINYPGLTVFENIAAPLRLQKQPEQEISKRVKEIAD 118 +++ + V + +ER++AMV+Q + YP +TV++N+A L++Q + EI RV+ A Sbjct: 64 IVIGDRVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGLSKSEIDARVQRAAA 123 Query: 119 KLHITHLLQRLPLELSGGQQQRCALARALIKRAPLVLLDEPLVNLDYKLREELRSELISL 178 L + LL+R P +LSGGQ+QR A+ RA++++ + L DEPL NLD KLR ++R E+ L Sbjct: 124 ILELGALLERTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEIQKL 183 Query: 179 FATGDTTVVYATTEPQEALLLGGHTAVMHEGRLLQFAPTLELFNSPASTRVAAIFNDPPM 238 A+ TT +Y T + EA+ LG VM+ G Q E++ PA+T VA+ PPM Sbjct: 184 HASLRTTSLYVTHDQVEAMTLGQRMIVMNRGVAEQIGTPAEVYARPATTFVASFIGSPPM 243 Query: 239 NLLDATAISTAHGVAAIRMNDGSVLEIAGRSLSLSEGQPCKLGIRCNDVRLEALSAPGVS 298 NLL + + N +L + + L+ + GQ LG+R + L L Sbjct: 244 NLLQGKLSADGASFEVSKGNASDILRLP-QPLTGAAGQERILGVRPEHL-LPILDGSAAQ 301 Query: 299 LGCSVTLAELSGSETYLHLRHGDVPLVAQLSGVHEVAIGSTVQVSIAAAKAFLFDTQ 355 L V L E G+E +H R G LV + +V G + S A FD + Sbjct: 302 LSLEVELVEALGAELLVHARCGGQALVLRCPANVQVRTGQRIGASFGAGDVHWFDVK 358 >gi|300312694|ref|YP_003776786.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 406 Score = 201 bits (512), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 133/356 (37%), Positives = 192/356 (53%), Gaps = 20/356 (5%) Query: 18 LYPLDLNLAKGGINVLLGPTQAGKTSLMRIIAGLDKPTAGRVLVDGQDVTGVGVRERNLA 77 L+PLDL++ G VLLGP+ GK++++R+IAGL+ + G + + G V + RERN+A Sbjct: 20 LHPLDLHIGDGEFVVLLGPSGCGKSTMLRMIAGLEDISGGTLRIGGTVVNDLPARERNVA 79 Query: 78 MVYQQFINYPGLTVFENIAAPLRLQKQPEQEISKRVKEIADKLHITHLLQRLPLELSGGQ 137 MV+Q + YP ++V++NIA LR K+P EI +RV+E+A L++ LL+R P +SGGQ Sbjct: 80 MVFQNYALYPHMSVYDNIAFGLRRLKRPAAEIDRRVREVAALLNLEALLERKPRAMSGGQ 139 Query: 138 QQRCALARALIKRAPLVLLDEPLVNLDYKLREELRSELISLFATGDTTVVYATTEPQEAL 197 QQR A+ARA+IK + L DEPL NLD KLR +LR ++ L TT VY T + EA+ Sbjct: 140 QQRAAIARAIIKTPSVFLFDEPLSNLDAKLRAQLRGDIKRLHQRLRTTTVYVTHDQLEAM 199 Query: 198 LLGGHTAVMHEGRLLQFAPTLELFNSPASTRVAAIFNDPPMNLLDATA--------ISTA 249 L +M +GR++Q EL+ P + A P MN L T I TA Sbjct: 200 TLADRVILMQDGRIVQAGSPAELYRYPRNLFAAGFIGTPAMNFLSGTVQRQDGQLFIETA 259 Query: 250 HGVAAIRMNDGSVLEIAGRSLSLSEGQPCKLGIRCNDVRLEALSAPGVSLGC--SVTLAE 307 H A+ R L KL +R + VR+ P SL C SV L E Sbjct: 260 HQRWAL---------TGERFSRLRHAMAVKLAVRPDHVRIAGEREPAASLTCPVSVELVE 310 Query: 308 LSGSETYLHLRHGDVPLVAQLSGVHEVAIGSTVQVSIAAAKAFLFDTQ-GRLLSAP 362 + G++ L R GD L A + G+T+ +++ + +FD + G LS P Sbjct: 311 ILGADALLTTRCGDQTLTALVPADRLPQPGATLTLALDQHELHVFDVESGENLSLP 366 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.135 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,107,953 Number of extensions: 45834 Number of successful extensions: 485 Number of sequences better than 1.0e-08: 124 Number of HSP's gapped: 327 Number of HSP's successfully gapped: 132 Length of query: 366 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 280 Effective length of database: 1,212,660 Effective search space: 339544800 Effective search space used: 339544800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)