BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0130.p (274 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310298|ref|YP_003774390.1| glycerol-3-phosphate regulon re... 484 e-138 gi|300313730|ref|YP_003777822.1| DeoR family transcription regul... 93 2e-20 gi|300310357|ref|YP_003774449.1| DeoR family transcription repre... 88 6e-19 >gi|300310298|ref|YP_003774390.1| glycerol-3-phosphate regulon repressor transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 268 Score = 484 bits (1246), Expect = e-138, Method: Compositional matrix adjust. Identities = 251/266 (94%), Positives = 257/266 (96%), Gaps = 2/266 (0%) Query: 11 LFPKNQR--ISITSMLNPRQQTLLECVRKHGTISVEELAQQLNVTTQTVRRDVKAMVDAS 68 +F +N I+ +MLNPRQQTLLECVRKHGTISVEELAQQLNVTTQTVRRDVKAMVDAS Sbjct: 3 IFDQNNYSFINYHTMLNPRQQTLLECVRKHGTISVEELAQQLNVTTQTVRRDVKAMVDAS 62 Query: 69 LLARYHGGVGLLSSTENIAYPERQVMHADAKRRIGRTVAARVPDGCSLILNLGTTTEEVA 128 LLARYHGGVGLLSSTENIAYP+RQVMHA+AKRRIGRTVAARVPDGCSLILNLGTTTEEVA Sbjct: 63 LLARYHGGVGLLSSTENIAYPQRQVMHAEAKRRIGRTVAARVPDGCSLILNLGTTTEEVA 122 Query: 129 RALQQHKNLHVVTNNLNVANSLASNPALEVIIAGGVVRARDRGIVGEATIDFIRQFKVDI 188 ALQQHKNLHVVTNNLNVANSLASNPALEVIIAGGVVRARDRGIVGEATIDFIRQFKVDI Sbjct: 123 LALQQHKNLHVVTNNLNVANSLASNPALEVIIAGGVVRARDRGIVGEATIDFIRQFKVDI 182 Query: 189 GIIGISSIEMDGVLRDFDAREVKVAQTIIEQSRQVWLVADASKFGRQALVKMAHLSQIDV 248 GIIGISSIEMDGVLRDFDAREVKVAQTIIEQSRQVWLVADASKFGRQALVKMAHLSQIDV Sbjct: 183 GIIGISSIEMDGVLRDFDAREVKVAQTIIEQSRQVWLVADASKFGRQALVKMAHLSQIDV 242 Query: 249 LFTDAPPPPELATLLAETDVEVVIAK 274 LFTDAPPPPELA LLAETDVEVVIAK Sbjct: 243 LFTDAPPPPELAKLLAETDVEVVIAK 268 >gi|300313730|ref|YP_003777822.1| DeoR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 267 Score = 93.2 bits (230), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 67/251 (26%), Positives = 124/251 (49%), Gaps = 8/251 (3%) Query: 27 RQQTLLECVRKHGTISVEELAQQLNVTTQTVRRDVKAMVDASLLARYHGGVGLLSSTENI 86 R++ LL + +H ++VE+ LN + TVRRD+ + + +L R GG L+ + Sbjct: 6 RRKRLLSLLGEHTALTVEQFCHLLNASAATVRRDIAWLAERDMLTRTRGGAERLAQKRSA 65 Query: 87 AYPERQVMHAD------AKRRIGRTVAARVPDGCSLILNLGTTTEEVARALQQHKNLHVV 140 + A KR I R A +G ++I+N GTTT +A L Q K L ++ Sbjct: 66 FALSGETFQASLARQPAQKRAIARHAAEMCDNGETIIINGGTTTFLMAEYLAQ-KRLKIL 124 Query: 141 TNNLNVANSLASNPALEVIIAGGVVRARDRGIVGEATIDFIRQFKVDIGIIGISSIEMDG 200 TN+ +A L + ++I+ GG + I+ D + +GI + M G Sbjct: 125 TNSFLMAERLLTTSENQIIVPGGQIYREQNVILSPFENDITQHHYASKMFMGIYGVSMLG 184 Query: 201 VLRDFDAREVKVAQTIIEQSRQVWLVADASKFGRQALVKMAHLSQIDVLFTDAPPPPELA 260 ++ + D ++ + ++ Q+ Q+ ++AD+SKF R+A + + L++++ L TD A Sbjct: 185 LM-EADPLLIQAEKRLLGQAEQLVVLADSSKFSRKAGLILCGLNRVNCLVTDTGISDAAA 243 Query: 261 TLLAETDVEVV 271 ++ + V+VV Sbjct: 244 QMMEQAGVKVV 254 >gi|300310357|ref|YP_003774449.1| DeoR family transcription repressor protein [Herbaspirillum seropedicae SmR1] Length = 271 Score = 88.2 bits (217), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 70/243 (28%), Positives = 114/243 (46%), Gaps = 7/243 (2%) Query: 33 ECVRKHGTISVEELAQQLNVTTQTVRRDVKAMVDASLLARYHGGVGLLSS---TENIAYP 89 E +R HG + +A L VT TVRRD+ A D+ L+ GG L +S +EN Sbjct: 30 EMIRDHGPTPLSRIADVLGVTVMTVRRDL-AGEDSPLICL--GGHVLEASPGGSENRYSI 86 Query: 90 ERQV-MHADAKRRIGRTVAARVPDGCSLILNLGTTTEEVARALQQHKNLHVVTNNLNVAN 148 +R+ HA KR + A RV +G SL ++ GTT +A AL L V+ +LN+AN Sbjct: 87 DREADQHAQRKRLACQHAARRVVEGDSLFIDCGTTMTHLAEALPPEIGLSVICYSLNIAN 146 Query: 149 SLASNPALEVIIAGGVVRARDRGIVGEATIDFIRQFKVDIGIIGISSIEMDGVLRDFDAR 208 ++ P +VI+ GG+ E + ++++ V+ + ++ + + Sbjct: 147 IVSQRPNTQVILLGGLYHPSSASFASEEGVAYLKRLGVNKAFLSAGGVDARRGVSCSNFH 206 Query: 209 EVKVAQTIIEQSRQVWLVADASKFGRQALVKMAHLSQIDVLFTDAPPPPELATLLAETDV 268 EV + Q IE + Q ++V D SK GR + L + P + L ++ + Sbjct: 207 EVPIKQAAIESAAQCYVVIDQSKLGRFRPAFYSTLEVFSGIVVGGTPEQDQLDLFSDFPL 266 Query: 269 EVV 271 EVV Sbjct: 267 EVV 269 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.134 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 646,864 Number of extensions: 22692 Number of successful extensions: 134 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 130 Number of HSP's successfully gapped: 3 Length of query: 274 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 190 Effective length of database: 1,222,130 Effective search space: 232204700 Effective search space used: 232204700 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)