BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0123.p
         (208 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311733|ref|YP_003775825.1| hypothetical protein Hsero_2418...   306   8e-85

>gi|300311733|ref|YP_003775825.1| hypothetical protein Hsero_2418
           [Herbaspirillum seropedicae SmR1]
          Length = 220

 Score =  306 bits (784), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 152/220 (69%), Positives = 171/220 (77%), Gaps = 12/220 (5%)

Query: 1   MTDIEILSHDETEKLLPWFVNGTLNEEQQRAVREHLQSCPECSAAYSWACSERAAIYTEQ 60
           MT+IEI SHDE ++LLPWFVNGTL+E  Q+AVR HLQSCP C AAY WA  ERAAIY EQ
Sbjct: 1   MTEIEIHSHDEIQRLLPWFVNGTLDEAMQQAVRAHLQSCPSCHAAYEWASRERAAIYLEQ 60

Query: 61  EAVPDVEASLARMMARIEP------------RAPGKTSSFLGRMTSLLVGKPWMPVALAL 108
             VPDVEASLARM  RI P              P K +S   R+ +L  GKPW+PVA A+
Sbjct: 61  LPVPDVEASLARMRERIAPSKATQASPVGNQHGPKKGASVFSRILALYGGKPWVPVAFAI 120

Query: 109 QAVLVVALGLGVFMQSGVKQYVALSDADSGKMKIAIVFKPDTTVQRMQEILRAINANIVA 168
           QA L+VALG+GVFMQS VKQYVAL +AD GK+KIA+VFKPDTTVQRMQEILRA NANIVA
Sbjct: 121 QAALIVALGMGVFMQSEVKQYVALGNADIGKLKIALVFKPDTTVQRMQEILRATNANIVA 180

Query: 169 GPTVTFAYVVEMPAGEESSALRHFKQAPEISLVQSLGPGK 208
           GPTVTFAYVVE+PA EE+ ALRHF+ APE+SLVQSLG  K
Sbjct: 181 GPTVTFAYVVEVPASEEAGALRHFRLAPEVSLVQSLGQEK 220


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.130    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 556,354
Number of extensions: 18343
Number of successful extensions: 61
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 1
Length of query: 208
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 127
Effective length of database: 1,236,335
Effective search space: 157014545
Effective search space used: 157014545
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)