BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0122.p
         (408 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311732|ref|YP_003775824.1| subtilisin-like serine protease...   659   0.0  

>gi|300311732|ref|YP_003775824.1| subtilisin-like serine protease
           [Herbaspirillum seropedicae SmR1]
          Length = 401

 Score =  659 bits (1700), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/387 (81%), Positives = 348/387 (89%), Gaps = 4/387 (1%)

Query: 26  EAPAQGPP----EARQILVMLHLPAPHFRPDSSYGGGYRNEAAGHARLTIAREIANQYQL 81
           +A  QG P    EARQILVMLHLPA HFRPD+SYGGGYRN+ AGH+RLTIA+E+A+QY+L
Sbjct: 15  QAQGQGRPDSSAEARQILVMLHLPAAHFRPDASYGGGYRNDNAGHSRLTIAQEVADQYRL 74

Query: 82  TLVSRWPMSTLGVDCFVMNVPGSASMEETVKLVSADSRVEWAQEINSFTALGASDPLYPI 141
           TLVSRWPM TLGVDCFVM VP    +E+TVKLVSADSRVEWAQEI SF  LG +DPLYPI
Sbjct: 75  TLVSRWPMPTLGVDCFVMTVPPDRDLEDTVKLVSADSRVEWAQEIQSFVTLGEADPLYPI 134

Query: 142 QPSARFWHLDRIHSVATGKGVRIAVIDSGVEDDHPDLAGQVTERENFVTDRSYAAESHGT 201
           QPSA FWHLDR+H+VATGKGVRIAVIDSGVE+DHPDL GQVT RENFVT ++YAAESHGT
Sbjct: 135 QPSATFWHLDRLHTVATGKGVRIAVIDSGVEEDHPDLLGQVTARENFVTQQAYAAESHGT 194

Query: 202 AVAGIIVAVRDNNIGIAGIAPDAKIMALRACWQNGDRSLCNSFTIGQALNFAILNGAKIV 261
           AVAGIIVA+RDN +GI GIAPDAKIMALRACWQ G +SLCNSFTIGQALNFAILNGAKIV
Sbjct: 195 AVAGIIVALRDNKLGITGIAPDAKIMALRACWQEGGKSLCNSFTIGQALNFAILNGAKIV 254

Query: 262 NMSLAGPRDQLIKRLIEAAQQRGMLIVAASSGDDPAGGFPASVPGVIAVADKILPSRPAS 321
           NMS AGPRDQLIKRLIEAAQQRGMLIVAA++ DD  GGFPAS+PGV+AVADKI  +RPAS
Sbjct: 255 NMSFAGPRDQLIKRLIEAAQQRGMLIVAATTADDADGGFPASMPGVLAVADKIQSARPAS 314

Query: 322 TLYAPGQGIPTTTPHFAWNLVSGSSFSAAHVSGLAALLVQLRPRDSPEQIRKSVITRNAY 381
            LYAPGQGIPTTTPH AW+LVSGSSFSAAHVSGLAALLVQLRP ++ EQIRKSV+TR+AY
Sbjct: 315 ILYAPGQGIPTTTPHHAWSLVSGSSFSAAHVSGLAALLVQLRPGNNAEQIRKSVVTRSAY 374

Query: 382 IDGAGSGNIEVCATFRKLVERCVCECQ 408
           I GAGSGNI+VC TFRKLVE+C+CECQ
Sbjct: 375 ISGAGSGNIDVCVTFRKLVEKCICECQ 401


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.133    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,299,196
Number of extensions: 57019
Number of successful extensions: 166
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 321
Effective length of database: 1,207,925
Effective search space: 387743925
Effective search space used: 387743925
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)