BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0120.p (254 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310290|ref|YP_003774382.1| branched-chain amino acid ABC t... 456 e-130 gi|300311877|ref|YP_003775969.1| amino acid ABC transporter ATPa... 256 1e-69 gi|300312240|ref|YP_003776332.1| amino acid ABC transporter ATPa... 190 8e-50 gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC t... 189 2e-49 gi|300310524|ref|YP_003774616.1| branched-chain amino acid ABC t... 182 2e-47 >gi|300310290|ref|YP_003774382.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 456 bits (1173), Expect = e-130, Method: Compositional matrix adjust. Identities = 232/253 (91%), Positives = 241/253 (95%) Query: 1 MSAPLLQIESIEVRYQGALLALQDVSLDVQAGEIHALLGANGAGKSTTLKAVSNLLAAQR 60 MSAPLLQIE+IEVRYQGALLAL++VSL+VQAGEIHALLGANGAGKSTTLKAVSNLLAAQR Sbjct: 1 MSAPLLQIEAIEVRYQGALLALEEVSLEVQAGEIHALLGANGAGKSTTLKAVSNLLAAQR 60 Query: 61 GQVRGGRILFEGREVARSSPAELVRQGLAQVLEGRHCFASLSVEENLLTGWPAHFTRRAV 120 GQVR G IL+EGREV RSSPAELVRQGLAQVLEGRHCFASL+VEENLLTGWPAHFTRR V Sbjct: 61 GQVRAGHILYEGREVGRSSPAELVRQGLAQVLEGRHCFASLTVEENLLTGWPAHFTRRTV 120 Query: 121 LREALDRIYAFFPLLHQRRRSLAGLCSGGEQQMLAIGRALISRPRLLVLDEPSMGLAPKV 180 LR AL+RIYAFFP LHQRRRSLAGLCSGGEQQMLAIGRALISRPRLLVLDEPSMGLAPKV Sbjct: 121 LRAALERIYAFFPQLHQRRRSLAGLCSGGEQQMLAIGRALISRPRLLVLDEPSMGLAPKV 180 Query: 181 VADIFAQLSRLNREEGVALLVAEQNSAVALQYAHRATVLEHGHSVLSGEAGALRERAGIQ 240 VADIFAQLSRLNREEGVALLVAEQNSAVALQYAHRATVLEHG SVLS EA ALR+RA IQ Sbjct: 181 VADIFAQLSRLNREEGVALLVAEQNSAVALQYAHRATVLEHGRSVLSDEAQALRQRADIQ 240 Query: 241 AFYFGEGRAWQAA 253 +FYFGEGR QAA Sbjct: 241 SFYFGEGRGLQAA 253 >gi|300311877|ref|YP_003775969.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 288 Score = 256 bits (655), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 128/243 (52%), Positives = 170/243 (69%) Query: 3 APLLQIESIEVRYQGALLALQDVSLDVQAGEIHALLGANGAGKSTTLKAVSNLLAAQRGQ 62 A L I +IEV Y +L L+ VSLDV G+I ALLGANGAGKSTTLKA+SNLL A+RG Sbjct: 23 AKALAINNIEVIYDHVILVLKGVSLDVPEGKIVALLGANGAGKSTTLKAISNLLHAERGD 82 Query: 63 VRGGRILFEGREVARSSPAELVRQGLAQVLEGRHCFASLSVEENLLTGWPAHFTRRAVLR 122 V G I F G V R +P +LV++G+ QV+EGRHCF L+VEENLLTG A ++ Sbjct: 83 VTKGSIEFRGERVDRMTPNDLVKRGVIQVMEGRHCFGHLTVEENLLTGAYTRGISNAEVK 142 Query: 123 EALDRIYAFFPLLHQRRRSLAGLCSGGEQQMLAIGRALISRPRLLVLDEPSMGLAPKVVA 182 L++IY +FP L RR+S +G SGGEQQM AIGRA++++P +++LDEPSMGLAP++V Sbjct: 143 HELEKIYDYFPRLKVRRKSQSGYTSGGEQQMTAIGRAMMAKPSMILLDEPSMGLAPQIVE 202 Query: 183 DIFAQLSRLNREEGVALLVAEQNSAVALQYAHRATVLEHGHSVLSGEAGALRERAGIQAF 242 +IF + LN +E V+ L+AEQN+ VAL+YA +LE+G V+ G A L + ++ F Sbjct: 203 EIFEIVKDLNSKEKVSFLLAEQNTMVALRYADFGYILENGRVVMEGAASELADNEDVKEF 262 Query: 243 YFG 245 Y G Sbjct: 263 YLG 265 >gi|300312240|ref|YP_003776332.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 243 Score = 190 bits (483), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 109/242 (45%), Positives = 153/242 (63%), Gaps = 8/242 (3%) Query: 4 PLLQIESIEVRYQGALLALQDVSLDVQAGEIHALLGANGAGKSTTLKAVSNLLAAQRGQV 63 P+LQ+E + V Y G + A++ +SL + GEI AL+GANGAGKST+L A+S L+ AQRG Sbjct: 9 PILQVEDLAVAY-GHIEAVKGISLSLNEGEITALVGANGAGKSTSLLAISGLVKAQRG-- 65 Query: 64 RGGRILFEGREVARSSPAELVRQGLAQVLEGRHCFASLSVEENLLTGWPAHFTRRAVLRE 123 R+L G+++ + SP +V G+ QV EGR +L+VEENL G + V R+ Sbjct: 66 ---RVLLHGQDLLQMSPHRIVESGVVQVAEGRATLTTLTVEENLGLGAYTRKDKDGVARD 122 Query: 124 ALDRIYAFFPLLHQRRRSLAGLCSGGEQQMLAIGRALISRPRLLVLDEPSMGLAPKVVAD 183 L+ +Y+ FP+L R LAG SGGEQQMLAIGRAL+++P++L+LDEPSMGLAP ++ + Sbjct: 123 -LEWVYSLFPVLKNRAAGLAGNLSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQE 181 Query: 184 IFAQLSRLNREEGVALLVAEQNSAVALQYAHRATVLEHGHSVLSGEAGALRERAGIQAFY 243 IF + +N+ G+ +L+ EQN AL+ A R VLE G VL L + Y Sbjct: 182 IFRIVQEINK-TGMTVLLVEQNVRQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAY 240 Query: 244 FG 245 G Sbjct: 241 LG 242 >gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 235 Score = 189 bits (480), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 108/243 (44%), Positives = 150/243 (61%), Gaps = 9/243 (3%) Query: 5 LLQIESIEVRYQGALLALQDVSLDVQAGEIHALLGANGAGKSTTLKAVSNLLAAQRGQVR 64 +LQ + + Y GA+ AL VSL+V+ GEI L+GANGAGK+T L + R + Sbjct: 2 MLQFDKVHTHY-GAIEALHGVSLNVEKGEIVTLIGANGAGKTTLLMTLCG-----RPRAS 55 Query: 65 GGRILFEGREVARSSPAELVRQGLAQVLEGRHCFASLSVEENLLTGWPAHFTRRAVLREA 124 GR++FEG+++ + E++R+GLA EGR F SL+V ENL G A F + + Sbjct: 56 SGRVIFEGQDITQLQTHEIMRRGLAISPEGRRVFPSLTVLENLKMG--AFFASNEAIEQG 113 Query: 125 LDRIYAFFPLLHQRRRSLAGLCSGGEQQMLAIGRALISRPRLLVLDEPSMGLAPKVVADI 184 ++ ++ FP L +R AG SGGEQQMLAIGRAL+S+PRLL+LDEP++GLAP V+A I Sbjct: 114 IEYVFGLFPRLKERAAQRAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQI 173 Query: 185 FAQLSRLNREEGVALLVAEQNSAVALQYAHRATVLEHGHSVLSGEAGALRERAGIQAFYF 244 F + R RE GV + + EQN+ AL A R VLE+GH V+S L + ++ Y Sbjct: 174 F-DIIRTIRESGVTVFLVEQNANKALGVADRGYVLENGHVVMSDTGANLLANSDVRKAYL 232 Query: 245 GEG 247 G G Sbjct: 233 GHG 235 >gi|300310524|ref|YP_003774616.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 241 Score = 182 bits (463), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 102/247 (41%), Positives = 156/247 (63%), Gaps = 6/247 (2%) Query: 1 MSAPLLQIESIEVRYQGALLALQDVSLDVQAGEIHALLGANGAGKSTTLKAVSNLLAAQR 60 M+ +L+++ + V Y G + A++ + L+V GE+ L+GANGAGK+TTLKA++ L A R Sbjct: 1 MTTNILKVQQLSVAY-GGIQAVKGIDLEVNEGELVTLIGANGAGKTTTLKAITGTLPASR 59 Query: 61 GQVRGGRILFEGREVARSSPAELVRQGLAQVLEGRHCFASLSVEENLLTGWPAHFTRRAV 120 + G I + G+ + ELV+ LA V EGR F +S++ENLL G + + Sbjct: 60 VE---GHIEYLGQPLKGKKSFELVKDKLAMVPEGRGVFTRMSIQENLLMGAYTSDDKGQI 116 Query: 121 LREALDRIYAFFPLLHQRRRSLAGLCSGGEQQMLAIGRALISRPRLLVLDEPSMGLAPKV 180 + +D+ +A FP L +R +AG SGGEQQMLA+ RAL+S P+LL+LDEPSMGL+P + Sbjct: 117 AAD-IDKWFAVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPKLLLLDEPSMGLSPIM 175 Query: 181 VADIFAQLSRLNREEGVALLVAEQNSAVALQYAHRATVLEHGHSVLSGEAGALRERAGIQ 240 V IF ++ R +G+ +L+ EQN+ +AL+ AHR V+E G + G+A + + ++ Sbjct: 176 VEKIF-EVIRNVSAQGITILLVEQNAKLALEAAHRGYVMESGLITMQGQAQQMLDDPRVK 234 Query: 241 AFYFGEG 247 A Y GEG Sbjct: 235 AAYLGEG 241 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.135 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 791,773 Number of extensions: 32608 Number of successful extensions: 509 Number of sequences better than 1.0e-08: 120 Number of HSP's gapped: 304 Number of HSP's successfully gapped: 134 Length of query: 254 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 171 Effective length of database: 1,226,865 Effective search space: 209793915 Effective search space used: 209793915 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)