BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0114.p (274 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310285|ref|YP_003774377.1| branched-chain amino acid ABC t... 453 e-129 gi|300311881|ref|YP_003775973.1| amino acid ABC transporter ATPa... 273 1e-74 gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC t... 228 3e-61 gi|300309521|ref|YP_003773613.1| branched-chain amino acid ABC t... 191 8e-50 gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPa... 190 1e-49 >gi|300310285|ref|YP_003774377.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 263 Score = 453 bits (1166), Expect = e-129, Method: Compositional matrix adjust. Identities = 233/256 (91%), Positives = 239/256 (93%) Query: 11 APVLQLEGISLSFGGVQALRHVDLALHEREILAVIGPNGAGKSSLVNVMSGLYRPTQGRV 70 APVLQLEG+SLSFGGVQALRHVDLALHEREILAVIGPNGAGKSSLVNVMSGLYRPTQG V Sbjct: 6 APVLQLEGVSLSFGGVQALRHVDLALHEREILAVIGPNGAGKSSLVNVMSGLYRPTQGTV 65 Query: 71 SLAGQRFRQVPTARLARLGVARTFQNLALFKGLSVRDNIVLGRVDAMRASFVEQIAGLGR 130 SL G+R RQVPTARL RLGVARTFQNLALFKGLSVRDNIVLGRV+AMRASFVEQI GLGR Sbjct: 66 SLGGRRLRQVPTARLGRLGVARTFQNLALFKGLSVRDNIVLGRVNAMRASFVEQIIGLGR 125 Query: 131 ARRERNEARALAAQMMDFLDLRAHAERPAGGLPYGLQKRVELARALVAQPRLLLLDEPMA 190 ARRER +ARA A QMM FLDLRA+AER GGLPYGLQKRVELARALVA+PRLLLLDEPMA Sbjct: 126 ARRERIDARAQAEQMMAFLDLRAYAERQVGGLPYGLQKRVELARALVARPRLLLLDEPMA 185 Query: 191 GMTVTEKSEMTHFVRAARDQFGTAILLIEHDIGLVFGLSDRVVVLQHGSKIADGAPAEVR 250 GMTVTEKSEM FVRAARDQF TAILLIEHDIGLVFGLSDRVVVL HGSKIADGAPA VR Sbjct: 186 GMTVTEKSEMADFVRAARDQFDTAILLIEHDIGLVFGLSDRVVVLHHGSKIADGAPAAVR 245 Query: 251 QDAAVIEAYLGVAQPE 266 QDAAVIEAYLGVAQ E Sbjct: 246 QDAAVIEAYLGVAQQE 261 >gi|300311881|ref|YP_003775973.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 293 Score = 273 bits (698), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 135/252 (53%), Positives = 176/252 (69%) Query: 13 VLQLEGISLSFGGVQALRHVDLALHEREILAVIGPNGAGKSSLVNVMSGLYRPTQGRVSL 72 +L L+ ISLSFGGV+AL + + E EI A+IGPNGAGKSS++NV++G+Y P +GR+ Sbjct: 42 ILDLQNISLSFGGVKALTDISFDVREHEIRAIIGPNGAGKSSMINVINGVYHPQKGRILY 101 Query: 73 AGQRFRQVPTARLARLGVARTFQNLALFKGLSVRDNIVLGRVDAMRASFVEQIAGLGRAR 132 GQ + + +AR G+ARTFQN+ALFKG++V DNI+ GR MR+ + G AR Sbjct: 102 RGQPRAGMHPSAIARQGIARTFQNIALFKGMTVLDNIMTGRNTKMRSGLLSNAMWWGAAR 161 Query: 133 RERNEARALAAQMMDFLDLRAHAERPAGGLPYGLQKRVELARALVAQPRLLLLDEPMAGM 192 E E R Q++DFL+++ + P G LPYGLQKRVELARAL A+P +LLLDEPMAGM Sbjct: 162 NEEIEHRRKVEQVIDFLEIQHIRKTPVGRLPYGLQKRVELARALAAEPHMLLLDEPMAGM 221 Query: 193 TVTEKSEMTHFVRAARDQFGTAILLIEHDIGLVFGLSDRVVVLQHGSKIADGAPAEVRQD 252 V EK +M F+ DQFGT I+LIEHD+G+V +SDRVVVL +G KI DG P EV + Sbjct: 222 NVEEKQDMCRFILDVNDQFGTTIVLIEHDMGVVMDISDRVVVLDYGKKIGDGTPEEVMGN 281 Query: 253 AAVIEAYLGVAQ 264 VI+AYLG + Sbjct: 282 EDVIKAYLGTSH 293 >gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 258 Score = 228 bits (582), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 110/249 (44%), Positives = 165/249 (66%) Query: 13 VLQLEGISLSFGGVQALRHVDLALHEREILAVIGPNGAGKSSLVNVMSGLYRPTQGRVSL 72 +L++ +S+ FGG+ A+ V LA+ ERE+ A+IGPNGAGK+++ N +SG YRPT G + L Sbjct: 8 MLEVSNLSMRFGGLLAVDGVSLAVQEREVFAIIGPNGAGKTTVFNCISGFYRPTSGEIML 67 Query: 73 AGQRFRQVPTARLARLGVARTFQNLALFKGLSVRDNIVLGRVDAMRASFVEQIAGLGRAR 132 G + P+ ++A+ G+ RTFQN+ LFK ++V +N+++ + + + + + R Sbjct: 68 DGASIARQPSHQVAQQGLVRTFQNIRLFKSMTVVENLLVAQHQQVNTNLLSGLLKTPAYR 127 Query: 133 RERNEARALAAQMMDFLDLRAHAERPAGGLPYGLQKRVELARALVAQPRLLLLDEPMAGM 192 + EA AA +D L L A A R AG L YGLQ+RVE+AR ++ +PRLLLLDEP AG+ Sbjct: 128 KSEQEALQRAAYWLDQLGLTALANREAGTLSYGLQRRVEIARCMITKPRLLLLDEPAAGL 187 Query: 193 TVTEKSEMTHFVRAARDQFGTAILLIEHDIGLVFGLSDRVVVLQHGSKIADGAPAEVRQD 252 EK E++ + R + G A+LLIEHD+ L+ G+SDR++V++HG I G P +VR D Sbjct: 188 NPQEKQELSQLIDRLRREHGVAVLLIEHDMSLIMGISDRILVMEHGKPIVTGTPEQVRSD 247 Query: 253 AAVIEAYLG 261 VI+AYLG Sbjct: 248 ERVIKAYLG 256 >gi|300309521|ref|YP_003773613.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 191 bits (484), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 102/249 (40%), Positives = 155/249 (62%), Gaps = 1/249 (0%) Query: 13 VLQLEGISLSFGGVQALRHVDLALHEREILAVIGPNGAGKSSLVNVMSGLYRPTQGRVSL 72 +L++ +S FGG+QAL V + + +I +IGPNGAGK++ NV++GLY+P G L Sbjct: 5 LLKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTGTFEL 64 Query: 73 AGQRFRQVPTARLARLGVARTFQNLALFKGLSVRDNIVLGRVDAMRASFVEQIAGLGRAR 132 G+ + +A+ G+ARTFQN+ LF ++V +N+++G R + + AR Sbjct: 65 DGKPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTRQNVFGAVFRHKAAR 124 Query: 133 RERNEARALAAQMMDFLDLRAHAERPAGGLPYGLQKRVELARALVAQPRLLLLDEPMAGM 192 E R + +++DF+ + A+R A L YG Q+R+E+ARAL P+LL LDEP AGM Sbjct: 125 EEEAAIREKSQKLLDFVGIGQFAKRTARHLSYGDQRRLEIARALATDPQLLALDEPAAGM 184 Query: 193 TVTEKSEMTHFVRAARDQFGTAILLIEHDIGLVFGLSDRVVVLQHGSKIADGAPAEVRQD 252 TEK + + + + G ILLIEHD+ L+ GL +R+ VL +G IA+G PA+V+++ Sbjct: 185 NATEKLGLRELLVKIQAE-GKTILLIEHDVKLMMGLCNRITVLDYGKPIAEGVPADVQKN 243 Query: 253 AAVIEAYLG 261 AVIEAYLG Sbjct: 244 PAVIEAYLG 252 >gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 190 bits (482), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 98/249 (39%), Positives = 151/249 (60%), Gaps = 1/249 (0%) Query: 13 VLQLEGISLSFGGVQALRHVDLALHEREILAVIGPNGAGKSSLVNVMSGLYRPTQGRVSL 72 +LQL IS +FGG+Q L+ V+ + + EI +IGPNGAGK+++ N+++GL R + G + Sbjct: 2 LLQLNDISKNFGGLQVLQGVNFNVRQGEIFGLIGPNGAGKTTVFNLITGLLRASSGSIRF 61 Query: 73 AGQRFRQVPTARLARLGVARTFQNLALFKGLSVRDNIVLGRVDAMRASFVEQIAGLGRAR 132 V ++ G+ARTFQN+ +FK +++ +N+V+G D + + LG R Sbjct: 62 NDDDIGAVAPHKITERGIARTFQNIRVFKEMTLLENVVVGMHDHLNYGVASMLLNLGGFR 121 Query: 133 RERNEARALAAQMMDFLDLRAHAERPAGGLPYGLQKRVELARALVAQPRLLLLDEPMAGM 192 EAR A +++ ++ L A A L YG Q+++E ARAL +P+LLLLDEP+AGM Sbjct: 122 NAEKEARERALELLSWVRLDHKAHMLADSLSYGEQRKLEFARALATKPKLLLLDEPVAGM 181 Query: 193 TVTEKSEMTHFVRAARDQFGTAILLIEHDIGLVFGLSDRVVVLQHGSKIADGAPAEVRQD 252 EK+E+ + + Q G I +IEHD+ V GL +R+ VL G IA+G P +++ + Sbjct: 182 NPAEKTELMSEIVNIK-QRGFTIFMIEHDMRFVMGLCERIAVLNFGKIIAEGTPDQIKNN 240 Query: 253 AAVIEAYLG 261 VIEAYLG Sbjct: 241 QEVIEAYLG 249 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.136 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 834,940 Number of extensions: 34143 Number of successful extensions: 540 Number of sequences better than 1.0e-08: 130 Number of HSP's gapped: 316 Number of HSP's successfully gapped: 146 Length of query: 274 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 190 Effective length of database: 1,222,130 Effective search space: 232204700 Effective search space used: 232204700 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)