BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0112.p
         (190 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310283|ref|YP_003774375.1| NADH-dependent FMN reductase ox...   330   3e-92
gi|300310976|ref|YP_003775068.1| NAD(P)H-dependent FMN reductase...    66   2e-12

>gi|300310283|ref|YP_003774375.1| NADH-dependent FMN reductase
           oxidorreductase [Herbaspirillum seropedicae SmR1]
          Length = 190

 Score =  330 bits (847), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 167/182 (91%), Positives = 175/182 (96%)

Query: 1   MSRPLQVVIVAGSGRRPSRTLGLLNAIAAQLGQHIAIQTEVVALSDLSGQLLSATELAQL 60
           MSRPLQVVIVAGSGRRPSRTLGLL+AIAAQLGQH+ I+TEVVALSDL GQLLSATELAQL
Sbjct: 1   MSRPLQVVIVAGSGRRPSRTLGLLHAIAAQLGQHLVIRTEVVALSDLGGQLLSATELAQL 60

Query: 61  PDPVRQKIAAVESADLLLAGSPVYRGSYSGLFKHLFDLVPQESLFGKPVLLAATGGSDRH 120
           PDPVRQKIAA+ESAD+L+AGSPVYRGSYSGLFKHLFDLVPQESL GKPVLLAATGGSDRH
Sbjct: 61  PDPVRQKIAAIESADVLVAGSPVYRGSYSGLFKHLFDLVPQESLIGKPVLLAATGGSDRH 120

Query: 121 ALAIDHQLRPLFAFFQALTLPLGVYANAQEFDNETIISAALQERIVLTVQRALPVLQGLA 180
           ALAIDHQLRPLFAFFQALTLPLGVYANA EFDNETIIS ALQERI LTVQRALPVLQ +A
Sbjct: 121 ALAIDHQLRPLFAFFQALTLPLGVYANALEFDNETIISPALQERIALTVQRALPVLQAVA 180

Query: 181 AS 182
           A+
Sbjct: 181 AT 182


>gi|300310976|ref|YP_003775068.1| NAD(P)H-dependent FMN reductase
           [Herbaspirillum seropedicae SmR1]
          Length = 198

 Score = 65.9 bits (159), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/145 (34%), Positives = 77/145 (53%), Gaps = 7/145 (4%)

Query: 5   LQVVIVAGSGRRPSRTLGLLNAIAAQLGQ--HIAIQTEVVALSDLSGQLLSATELAQLPD 62
           + ++++AGS   PSR+  LL+ +  +L Q  H   + EV    DL GQ +   +      
Sbjct: 1   MTILLLAGSPSAPSRSTRLLHHVGDKLAQLGHRYARLEV---RDLPGQAILRADWNDAE- 56

Query: 63  PVRQKIAAVESADLLLAGSPVYRGSYSGLFKHLFDLVPQESLFGKPVLLAATGGSDRHAL 122
            V+  +A V  A  ++  +PVY+ +YSG+ K   DL+PQ  L  K VL  ATGGS  H L
Sbjct: 57  -VKAALATVAEASAVVVATPVYKAAYSGILKAFLDLLPQFGLTDKLVLPLATGGSQSHML 115

Query: 123 AIDHQLRPLFAFFQALTLPLGVYAN 147
           A+D+ LRP+ +      +   +YA 
Sbjct: 116 ALDYALRPVLSSLNPKHVLPSIYAT 140


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 562,614
Number of extensions: 23927
Number of successful extensions: 88
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 2
Length of query: 190
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 110
Effective length of database: 1,241,070
Effective search space: 136517700
Effective search space used: 136517700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)