BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0108.p
         (250 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311699|ref|YP_003775791.1| cation transport P-type ATPase ...   209   1e-55
gi|300310937|ref|YP_003775029.1| heavy metal translocating P-typ...   103   2e-23
gi|300310933|ref|YP_003775025.1| metal-transporting P-type ATPas...    99   2e-22

>gi|300311699|ref|YP_003775791.1| cation transport P-type ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 734

 Score =  209 bits (533), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 115/200 (57%), Positives = 151/200 (75%)

Query: 38  WKVSAALVLLFVVSETVLSLWHRQWGLDLMALLTLAGALVLQEELTAAVIALMFVTGRAL 97
           W     +VL+ V+++T +++      LDL+AL+++AGA++L+E+L AAVIALMF  GRAL
Sbjct: 11  WLAGPLVVLMAVLADTAMAMRRGGMKLDLIALVSIAGAVLLREDLVAAVIALMFAGGRAL 70

Query: 98  ESHAERRAQQEMSALLAKVPQQAHRHEDGRVVAVAVAAIRPGDRLLVRPGETVPVDGIAL 157
           ES A+RRAQQEMSALL K P  A+R+E  R+V + +  +RPGDRLLVRPGE VPVDG  L
Sbjct: 71  ESVAQRRAQQEMSALLGKAPHVANRYEGERIVTIGLNLVRPGDRLLVRPGEPVPVDGRLL 130

Query: 158 SAALLDQATLTGESLPVNLASGAALCSGSINAGEAFDLLATSTAEQGTLGNIVRLVSAAR 217
             A++D++ LTGESLPV+   GA L SG +NAG AFDLLATST +  T   ++RLV AA+
Sbjct: 131 GPAVVDESMLTGESLPVSHPQGATLASGCVNAGNAFDLLATSTDQSSTFAQVLRLVQAAQ 190

Query: 218 QSRAPAVRLADRYALLFVPL 237
            S+APA R+ADRYALLF+PL
Sbjct: 191 ASQAPAARMADRYALLFIPL 210


>gi|300310937|ref|YP_003775029.1| heavy metal translocating P-type
           ATPase [Herbaspirillum seropedicae SmR1]
          Length = 744

 Score =  103 bits (256), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/197 (36%), Positives = 109/197 (55%), Gaps = 10/197 (5%)

Query: 44  LVLLFVVSETVLSLWHRQWGLDLMALLTLAGALVLQEEL---TAAVIALMFVTGRALESH 100
           LV L   +   LSLW  QW    + L T+ G  +    L   ++AV+  + + G+ LE  
Sbjct: 158 LVALGTSAAYGLSLW--QW----LTLPTMPGHAMAMPHLYFESSAVVITLVLLGKWLEGR 211

Query: 101 AERRAQQEMSALLAKVPQQAHRHEDGRVVAVAVAAIRPGDRLLVRPGETVPVDGIALSA- 159
           A+R+    ++AL A  P+ A    DG+ + V +A +R GD +++RPGE VPVDG+     
Sbjct: 212 AKRQTADAIAALNALRPENARVRRDGQDIEVPLAQVRVGDLVVLRPGERVPVDGVVREGR 271

Query: 160 ALLDQATLTGESLPVNLASGAALCSGSINAGEAFDLLATSTAEQGTLGNIVRLVSAARQS 219
           + LD+A LTGES P    +G  L +GSINA     +  T+   +  L  IVR+V  A+ +
Sbjct: 272 SHLDEAMLTGESRPQAKQAGDPLTAGSINAEGVLVMETTAIGAETVLARIVRMVEQAQAA 331

Query: 220 RAPAVRLADRYALLFVP 236
           +AP  RL D+ + +FVP
Sbjct: 332 KAPIQRLVDQVSAVFVP 348


>gi|300310933|ref|YP_003775025.1| metal-transporting P-type ATPase
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 778

 Score = 99.4 bits (246), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/181 (35%), Positives = 101/181 (55%), Gaps = 4/181 (2%)

Query: 60  RQWGLDLMALLTLA--GALVLQEELTAAVIALMFVTGRALESHAERRAQQEMSALLAKVP 117
           R + L++  L++LA  GA V+ +   AAV+ ++F     +E+ +  RA+  ++ LLA  P
Sbjct: 207 RNFSLNMNFLMSLAVIGAAVIGQWPEAAVVIVLFTLAEMIEALSLDRARNAIAGLLAMTP 266

Query: 118 QQAHRH-EDGRVVAVAVAAIRPGDRLLVRPGETVPVDGIALSAAL-LDQATLTGESLPVN 175
             A R  EDG    V    +   D + V PGE VP+DG+ LS +  ++QA +TGES+PV 
Sbjct: 267 DMATRRGEDGVWSTVPARTVTVDDTVRVAPGERVPLDGLVLSGSTSINQAPITGESIPVQ 326

Query: 176 LASGAALCSGSINAGEAFDLLATSTAEQGTLGNIVRLVSAARQSRAPAVRLADRYALLFV 235
             +G  + +G+IN   AF++  T+     TL  IV+ V  A+  RAP  R  D +A  ++
Sbjct: 327 KQAGDPVFAGTINEQGAFEMRVTAAQGDSTLARIVKSVQQAQGQRAPTQRFVDNFARYYI 386

Query: 236 P 236
           P
Sbjct: 387 P 387


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.134    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 667,126
Number of extensions: 23313
Number of successful extensions: 176
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 4
Length of query: 250
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 167
Effective length of database: 1,226,865
Effective search space: 204886455
Effective search space used: 204886455
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 129 (54.3 bits)