BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0107.p (404 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311139|ref|YP_003775231.1| MocR family transcription regul... 238 5e-64 gi|300311016|ref|YP_003775108.1| MocR family transcription regul... 137 2e-33 gi|300313928|ref|YP_003778020.1| GntR family transcription regul... 129 5e-31 gi|300311074|ref|YP_003775166.1| transcription regulator protein... 120 2e-28 gi|300310416|ref|YP_003774508.1| MocR family transcription regul... 120 3e-28 >gi|300311139|ref|YP_003775231.1| MocR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 398 Score = 238 bits (608), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 137/391 (35%), Positives = 211/391 (53%), Gaps = 10/391 (2%) Query: 5 YRFNPAFQSPQGSPIRELFKYTQQPGMISFAGGYPAPALFDTQGLAKSAATLLDSAAAAC 64 ++F+ + + S IRE+ K T +P + SFAGG P+P F + + + +L Sbjct: 11 WQFSQRADAMKSSAIREILKVTMRPDITSFAGGLPSPLTFPVEHMKTAFDRVLSQQGKMA 70 Query: 65 LQYGATEGAAQLAQVLKQVTRARIGGADPGELIVTTGSQQGFELLLRILLEPGDGVVIER 124 LQYG T+G L + + ++++ +GSQQG +LL ++L++ G V++E Sbjct: 71 LQYGPTDGYLPLREWIAASLSTNGAQISAEQVLMVSGSQQGLDLLGKVLIDEGSKVLVET 130 Query: 125 PCYPAAIQALRLAHAELLEIPGDAQGMDTDALEALLLAGARPKLLYLVPSFANPTGATLP 184 P Y A+QA L A+ +P D G+ + +EA+ GAR +LY +P+F NPTG TLP Sbjct: 131 PSYLGALQAFALYGAKFESVPSDEFGLQPETIEAIA-GGAR--MLYSLPNFQNPTGRTLP 187 Query: 185 LARRRHLLALAERYQFIVIEDDPYGQLRFSGQAEPPLLQVAQEIEGARDWLVYLSSLSKI 244 RR L+ R +IEDDPYG L + P +L + ++Y+ S SK+ Sbjct: 188 TERRFKLVETCARLGLPLIEDDPYGALSYQNAPLPKMLSMNP------SGVIYMGSFSKV 241 Query: 245 VAPGLRIGWMCGPSEILRRAVIAKQTGDLCSAPWMQMVAAQYLQAGHLQAHLPHIIATYR 304 + PG+R+G++ P ++ + AKQ DL +A QMV + ++ G L H+P I Y Sbjct: 242 LTPGIRLGYVVAPRPLILKMEQAKQATDLHTAQLTQMVVYEAIKDGFLDQHVPTIRKLYG 301 Query: 305 ERCAIMLSSLREAFGDRLSLIAPEGGMFIWASWKDGTDATALLQTAV-RHNVMYVPGSAF 363 ++C ML +L++ F S PEGGMFIW + + DA ALL AV + V +VPG+ F Sbjct: 302 DQCQAMLDALQQYFPASCSWSKPEGGMFIWVTLPEHIDAGALLNEAVEQEKVAFVPGAPF 361 Query: 364 YATPSDPGHWRLSFANAQPQEIIEGVTRLRR 394 YA + RLSF P++I GV RL + Sbjct: 362 YANVAQKNTLRLSFVTVPPEQIRAGVERLGK 392 >gi|300311016|ref|YP_003775108.1| MocR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 480 Score = 137 bits (344), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 111/392 (28%), Positives = 177/392 (45%), Gaps = 20/392 (5%) Query: 2 TAAYRFNPAFQSPQGSPIREL----FKYTQQPGMISFAGGYPAPALFDTQGLAKSAATLL 57 T + +PA+Q + L K QQ G + YP PALF + LA+ A + Sbjct: 83 TTSREDHPAWQESTEVDVSRLVLATLKTIQQDGTVPLGSPYPNPALFPSHRLAQYAGRIA 142 Query: 58 DSAAAACLQYGATEGAAQLAQVLKQVTRARIGG---ADPGELIVTTGSQQGFELLLRILL 114 A+ + + G +L L+Q+ R + DP E+++T G+ + L L+ + Sbjct: 143 RHASQSSVFDDLPPGHPEL---LRQIARRYLENGLKVDPEEIVITVGATEAINLCLQAVA 199 Query: 115 EPGDGVVIERPCYPAAIQALRLAHAELLEIPGDAQ-GMDTDALEALLLAGARPKLLYLVP 173 PGD + +E P + A + A+ LEIP D Q G+D ALE + A + ++P Sbjct: 200 RPGDTIAVETPTFYAMLHAIERLGMRALEIPTDPQRGIDVGALEERMKTQAIAACM-VMP 258 Query: 174 SFANPTGATLPLARRRHLLALAERYQFIVIEDDPYGQLRFSGQAEPPLLQVAQEIEGARD 233 +F NP G +P + + L+ LAE++Q VIE+ Y +L + G A P L+ RD Sbjct: 259 NFQNPLGFQMPDSEKERLVRLAEQHQMPVIENAVYSEL-YYGNAHPSSLK-----NYDRD 312 Query: 234 WLV-YLSSLSKIVAPGLRIGWMCGPSEILRRAVIAKQTGDLCSAPWMQMVAAQYLQAGHL 292 LV + SS SK + RIGW P + K L + Q A+YL G Sbjct: 313 GLVLHCSSFSKSLTSAYRIGWAM-PGRYRAQVEKLKFLNTLATPTAPQRAIAEYLTQGGY 371 Query: 293 QAHLPHIIATYRERCAIMLSSLREAFGDRLSLIAPEGGMFIWASWKDGTDATALLQTAVR 352 + HL + + ++ +M + F + P+GG +W G DA L + ++ Sbjct: 372 ERHLRRVRRAFAQQRDMMRHFVLRFFPAGTQVSEPQGGYVLWVELPQGVDAMELYRRSLA 431 Query: 353 HNVMYVPGSAFYATPSDPGHWRLSFANAQPQE 384 + PG F AT RL+++ A +E Sbjct: 432 LGITVAPGRIFAATNRYSHFIRLNYSYAWSKE 463 >gi|300313928|ref|YP_003778020.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 472 Score = 129 bits (323), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 102/371 (27%), Positives = 172/371 (46%), Gaps = 15/371 (4%) Query: 19 IRELFKYTQQPGMISFAGGYPAPALFDTQGLAKSAATLLDSAAAACLQYGATEGAAQLAQ 78 + E+F + P I G+ + +GL ++ ++ S A + YG G A L Q Sbjct: 110 LSEMFADERVP--IKAGCGWLPGKWLNDEGLHQAERRIIRSPGAQQVGYGHPYGYAPLRQ 167 Query: 79 VLKQVTRARIGGADPGELIVTTGSQQGFELLLRILLEPGDGVVIERPCYPAAIQALRLAH 138 ++ Q +++ T G+ Q +L++R + +PGD V+I+ P Y I LRLA Sbjct: 168 LITQFLGHWSLELGIEQVLTTHGATQALDLVIRTMTQPGDTVLIDDPGYCNLIAMLRLAG 227 Query: 139 AELLEIPGDAQGMDTDALEALLLAGARPKLLYLVPSFANPTGATLPLARRRHLLALAERY 198 ++ +P G+DTD LE L PK+ + NPTG + A +L AER+ Sbjct: 228 LNVIGVPRTPGGVDTDVLETLART-HHPKMFFTTSVLQNPTGTSYTPACAMRVLQAAERH 286 Query: 199 QFIVIEDDPYGQLRFSGQAEPPLLQVAQEIEGARDWLVYLSSLSKIVAPGLRIGWMCGPS 258 F V+EDD + +L GQA P+L ++ ++Y+ S SK +AP LR+G++ Sbjct: 287 GFWVVEDDIFREL---GQATDPMLAALDGLQR----VIYVGSYSKTIAPSLRVGYIACQR 339 Query: 259 EILRRAVIAKQTGDLCSAPWMQMVAAQYLQAGHLQAHLPHIIATYRERCAIMLSSLREAF 318 E+ R+ V K L ++ + + L GH + H+ + AT A + + L E Sbjct: 340 ELARQIVHTKMVLTLTNSEINERLVHNVLTEGHHRRHVQTLNATLLSAQATLNAKLSEV- 398 Query: 319 GDRLSLIAPEGGMFIWASWKDGTDATA--LLQTAVRHNVMYVPGSAFYATPSDPGHWRLS 376 A GGMF WA+ +G + +A + A + + PG F+ + +R + Sbjct: 399 -GLTPFTAARGGMFSWAT-IEGCELSAREIADRARQKGIWLAPGDFFHLSAPHQTSFRFN 456 Query: 377 FANAQPQEIIE 387 A E+ + Sbjct: 457 VGYADVPELFD 467 >gi|300311074|ref|YP_003775166.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 516 Score = 120 bits (302), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 102/367 (27%), Positives = 170/367 (46%), Gaps = 17/367 (4%) Query: 32 ISFAGGYPAPALFDTQGLAKSAATLLDSAAAACLQYGATEGAAQLAQVLKQVTRARIGGA 91 I +G AP L+ + L ++A L G A Q + + RA G Sbjct: 151 IDLSGMTCAPQLYAVETLKQAAMRALRERPELLTSAMPHNGNATFRQAVAR--RALNAGM 208 Query: 92 --DPGELIVTTGSQQGFELLLRILLEPGDGVVIERPCYPAAIQALRLAHAELLEIPGDAQ 149 D E++VT G + L +R + PGD + +E P Y +QAL + LEIP Sbjct: 209 RIDTEEVVVTHGCIEALNLAMRAVAGPGDTIAVESPTYFGLLQALENLGMKALEIPTSPH 268 Query: 150 -GMDTDALEALLLAGARPKLLYLVPSFANPTGATLPLARRRHLLALAERYQFIVIEDDPY 208 G+ +ALE + K + +VP+ NP G +P + L+ L ++ + +IEDD Y Sbjct: 269 TGISVEALELAVRTYGNIKAVVVVPNLQNPLGCIMPEDHKDQLVRLCDQLKLPLIEDDAY 328 Query: 209 GQLRFSGQAEPPLLQVAQEIEGARDWLVYLSSLSKIVAPGLRIGWMCGPSEILRRAVIAK 268 +L G P L+ +++ G ++Y +SL+K++APG+R+GWM G R + K Sbjct: 329 TEL-ADGSVTPSSLK-SRDRNGN---VIYCASLNKVLAPGMRLGWMNG-GRWHERVKMLK 382 Query: 269 QTGDLCSAPWMQMVAAQYLQAGHLQAHLPHIIATYRERCAIMLSSLREAF--GDRLSLIA 326 T + W Q+ AA ++ + HL + +++ M S+ F G RL+L Sbjct: 383 FTHTRANEEWTQVTAADFIASPAYDRHLRRLRQMLKQQRERMAESIAAYFPEGTRLNL-- 440 Query: 327 PEGGMFIWASWKDGTDATALLQTAVRHNVMYVPGSAFYATPSDPGHW-RLSFANAQPQEI 385 P GG+ +W + L + A+ V PG A ++ S GH+ R+ + +E+ Sbjct: 441 PNGGVGLWVELPVQVCSQQLFERALAEGVGVSPG-AIFSNSSRYGHFVRICCGHPFNREL 499 Query: 386 IEGVTRL 392 + + RL Sbjct: 500 DQALRRL 506 >gi|300310416|ref|YP_003774508.1| MocR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 516 Score = 120 bits (300), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 83/308 (26%), Positives = 147/308 (47%), Gaps = 14/308 (4%) Query: 60 AAAACLQYGATEGAAQLAQVLKQVTR-ARIGGADPGELIVTTGSQQGFELLLRILLEPGD 118 + A L YG G A L + + + R AR P ++++TTG Q ++++++L E GD Sbjct: 182 SNADLLTYGPGAGYAGLREQIAEYLRVARSVNCTPSQVLITTGIHQSLDIVVKLLGEHGD 241 Query: 119 GVVIERPCYPAAIQALRLAHAELLEIPGDAQGMDTDALEALLLAGAR--PKLLYLVPSFA 176 +E PCY L + + I D +GM + LA R P+ + PS Sbjct: 242 SAWVEDPCYWGTRSVLNSLGIQSVPIAVDQEGMR------MRLANLRRPPRFICTTPSHQ 295 Query: 177 NPTGATLPLARRRHLLALAERYQFIVIEDDPYGQLRFSGQAEPPLLQVAQEIEGARDWLV 236 P G + L+RRR LL A ++ +IEDD + R+ G+ PL + Q ++ +D ++ Sbjct: 296 YPLGMVMSLSRRRMLLEYAATHKVWIIEDDYDSEFRYGGR---PLASL-QGMD-TQDRVL 350 Query: 237 YLSSLSKIVAPGLRIGWMCGPSEILRRAVIAKQTGDLCSAPWMQMVAAQYLQAGHLQAHL 296 Y+ + SKI+ PGLRIG++ P + R ++Q A ++ GH +H+ Sbjct: 351 YMGTFSKIMFPGLRIGFLVVPESLARAFSTGIAELYRNGQVFLQATLADFMAEGHFASHI 410 Query: 297 PHIIATYRERCAIMLSSLREAFGDRLSLIAPEGGMFIWASWKDGTDATALLQTAVRHNVM 356 + Y ER ++ S+ FG+++++ E G+ + D + + A+ ++ Sbjct: 411 RKMRVLYAERLQLLQQSINRHFGEKMTITGGEAGLHLVLGLPQECDDVLICEQALAAGIV 470 Query: 357 YVPGSAFY 364 P S +Y Sbjct: 471 VRPLSRYY 478 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.135 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,305,699 Number of extensions: 53490 Number of successful extensions: 216 Number of sequences better than 1.0e-08: 13 Number of HSP's gapped: 192 Number of HSP's successfully gapped: 13 Length of query: 404 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 317 Effective length of database: 1,207,925 Effective search space: 382912225 Effective search space used: 382912225 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)