BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0106.p
         (347 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311545|ref|YP_003775637.1| Fe3+ ABC transporter periplasmi...    56   5e-09

>gi|300311545|ref|YP_003775637.1| Fe3+ ABC transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 371

 Score = 55.8 bits (133), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 91/371 (24%), Positives = 158/371 (42%), Gaps = 59/371 (15%)

Query: 2   KMKTLAVTCAIAATLIATGAQAQTK-TIYVGMNGGTMEKNYTASIFPDFEKAN-NVKVVV 59
           K+ +L  +   A  L +  A A T  T+Y  +    + K Y A+    F KAN ++++  
Sbjct: 33  KLFSLFASVIGAGMLFSAQAHAATTLTVYTALEADQI-KAYQAA----FHKANPDIEIKW 87

Query: 60  VPGTSSDIIAKMQAQRDKPQMHVAFLDDGIMYRAINMSLCEKVKDAAVLKDVYP------ 113
           V  ++  + AK+ A++  PQ  V +   G+   A +++L +K     +L    P      
Sbjct: 88  VRDSTGIVTAKLLAEKANPQADVIW---GLA--ATSLALLDK---EGMLMPYAPQGLSAI 139

Query: 114 ---FARLANDQA-VAIEMGVLGIGYNKKLFAEKGWPAPTSWMDFADPKYKQKVVFQSISA 169
              +   AN  A V +++    I +N     ++G P PTSW D   P Y  K+V  + ++
Sbjct: 140 DAKYRSAANPPAWVGMDVWASAICFNTVEAQKQGLPKPTSWADLTKPVYAGKIVMPNPAS 199

Query: 170 STFGLYGFMMFNRLVGGTDKNVDPGFKKWGSTVGPNVVEYLSSSAKISEMVQTNEAAIFP 229
           S  G      + +++G      D G+  +   +  N+ +Y  S +K  +   T E   FP
Sbjct: 200 SGTGYLDVSAWLQMMGE-----DKGW-AYMDALHKNIGQYTHSGSKPCKQAATGE---FP 250

Query: 230 LTVTGIA------NLKDKGIPAEFATPKEGGVLLMTGACPIKGNSEPELAQKLLEYLLTP 283
           +   GIA        K +G P +   P EG    +     +KG+   E A+KL ++    
Sbjct: 251 I---GIAFEYRAVKTKKEGAPIDVILPSEGLGWDIEATAIVKGSKHLEAAKKLADF---- 303

Query: 284 AVQAKSMALANSIPVNRN---VPLSDAAQAKLGKSEVLTKNL--NTVDWDTVNEKR--SE 336
           +   ++MAL       +N   V +   A+     S    K L  N   W + N  R  +E
Sbjct: 304 SASKEAMAL-----YEKNFAVVAIPGVAKPDELLSADYEKRLIKNDFTWASTNRDRILTE 358

Query: 337 WNNRWNRMIEQ 347
           W+ R+    E+
Sbjct: 359 WSKRYESKSEK 369


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.130    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,028,804
Number of extensions: 39832
Number of successful extensions: 128
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 2
Length of query: 347
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 261
Effective length of database: 1,212,660
Effective search space: 316504260
Effective search space used: 316504260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)