BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0098.p
         (177 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311331|ref|YP_003775423.1| transcription regulator protein...   134   5e-33
gi|300313616|ref|YP_003777708.1| TetR family transcription regul...    71   5e-14

>gi|300311331|ref|YP_003775423.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 223

 Score =  134 bits (337), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 71/177 (40%), Positives = 107/177 (60%)

Query: 1   MQVFWTRGYHGTSLVDLIDGTGLSRGSLYKAFGDKHGLFLDALDRYIAQSLERLLGTLQQ 60
           ++VF  RGY G S+ DL +   L++GSLYKAF DK  LFL AL+RY  Q  E+L   +  
Sbjct: 47  VRVFSERGYAGASISDLSEAMQLAQGSLYKAFRDKQSLFLAALERYRTQRSEKLRRAIDA 106

Query: 61  PGSAKAAIRKTLMGLAEMSCRAEGRRGCLLVATATEMVSHDELVADRVKAMIDRIRKAYA 120
             + +  +R  L+  AE +  A GR+GCL+V++A  +   +  VA ++ + + R      
Sbjct: 107 GATGRERLRNMLLFYAESAQGAAGRQGCLVVSSAVAITGFEPSVATQIASTLARNEALLG 166

Query: 121 EAIRRGQASGEIAAHHDPQTLATLIVCFTHGMRTLGKVDAIDKQMRAVVDQAMRLLD 177
           E IR+GQ  G +AAH DP + A L++C T GMR +GK     K+M A+V+ A+++LD
Sbjct: 167 ELIRQGQQDGSVAAHADPPSTARLLLCLTQGMRVVGKAGRSRKEMLALVEVALKVLD 223


>gi|300313616|ref|YP_003777708.1| TetR family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 210

 Score = 71.2 bits (173), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 87/192 (45%), Gaps = 24/192 (12%)

Query: 1   MQVFWTRGYHGTSLVDLIDGTGLSRGSLYKAFGDKHGLFLDALDRYIAQSLERLLGTLQQ 60
           MQVFW++GY GT++ DL +  G+   SLY AFGDK  LF + ++ Y        L  LQ 
Sbjct: 21  MQVFWSKGYEGTTMADLTEAIGVKAPSLYAAFGDKDALFREVVEVYARTVSAEPLRLLQ- 79

Query: 61  PGSAKAAIRKTLMGLAEMSCRA-EGR---------RGCLLVAT----ATEMVSHDELVAD 106
              A   IR+ L  +   S R   G+         +GC++V +    A E   H + ++ 
Sbjct: 80  ---AGKGIREDLQAMLRASVRMYSGKSTVPGLPAGKGCMVVISAINCAPENSEHSDALSQ 136

Query: 107 RVKAMIDRIRKAYAEAIRRGQASGEIAAHHDPQTLATLIVCFTHGMRTLGKVDAIDK-QM 165
           R     + IR    +A    Q  GEI A  D   L      F +G+  LG  D +   ++
Sbjct: 137 RRHKRRNEIRARLLQA----QREGEIRADADVTALGDFYTSFLNGL-ALGAKDGVSSARL 191

Query: 166 RAVVDQAMRLLD 177
            A +  AM  L+
Sbjct: 192 AATLGPAMLPLE 203


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.136    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 539,171
Number of extensions: 20716
Number of successful extensions: 100
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 2
Length of query: 177
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 98
Effective length of database: 1,245,805
Effective search space: 122088890
Effective search space used: 122088890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 127 (53.5 bits)