BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0093.p
         (240 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311758|ref|YP_003775850.1| alpha/beta hydrolase superfamil...   333   9e-93
gi|300313655|ref|YP_003777747.1| signal peptide protein [Herbasp...    59   5e-10
gi|300313766|ref|YP_003777858.1| alpha/beta hydrolase superfamil...    58   8e-10

>gi|300311758|ref|YP_003775850.1| alpha/beta hydrolase superfamily
           protein [Herbaspirillum seropedicae SmR1]
          Length = 243

 Score =  333 bits (853), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 165/243 (67%), Positives = 197/243 (81%), Gaps = 3/243 (1%)

Query: 1   LANFLLVHGAWQGKWIWPAVSAELTMRGHEVHAIDMPGSGEDTTPFGEVTLERYADAIRK 60
           +ANFLL+HGAWQGKW+WPAVSAELTMRGHEVH+ID+PGSG DTTP  +VTL  YADAI K
Sbjct: 1   MANFLLIHGAWQGKWVWPAVSAELTMRGHEVHSIDLPGSGADTTPLDQVTLSLYADAIVK 60

Query: 61  AIVSIGKRVTLVGHSLGGIAVAAAAEKNAQDVARIIYLGGYVPSDGESIDSLSDVVLDKE 120
           AI +IGKRVTLVGHS+GGIAV AAAE+ A  +ARIIYL  YVP +G+S+ +LSD+   + 
Sbjct: 61  AIKAIGKRVTLVGHSMGGIAVTAAAERAADSLARIIYLCAYVPVNGDSLSALSDLAPARL 120

Query: 121 AVILGMQDDHQIV---DTQADKRVARFMHDTPHAIAAWAAPQFRAQAVAPILSPVQLTEE 177
              + +  D       DTQ   RV  FM D P+A+A WAAPQFRAQA+AP+ +PVQ++E+
Sbjct: 121 PSPVALGHDALAALASDTQPSARVETFMQDAPYAVAHWAAPQFRAQAMAPMTTPVQVSEQ 180

Query: 178 RYGKLPKSYVVCTRDRVLDPVLQRVMAARAGCSRVKEIDSGHSPFLSRPTETAETLHRLV 237
            YGKLPKSY+VCTRDR +DPVLQRVMAAR+GCSR+KE+ S HSPFLSRPTETAE LHR+V
Sbjct: 181 AYGKLPKSYIVCTRDRAIDPVLQRVMAARSGCSRIKELASDHSPFLSRPTETAEMLHRMV 240

Query: 238 TEL 240
           TEL
Sbjct: 241 TEL 243


>gi|300313655|ref|YP_003777747.1| signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 261

 Score = 58.5 bits (140), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 97/239 (40%), Gaps = 21/239 (8%)

Query: 2   ANFLLVHGAWQGKWIWPAVSAELTMRGHEVHAIDMPGSGEDTTPFGEVTLERYADAIRKA 61
           A+ ++VHGA+     W  V   L  +G +V A+  P +          +L     A R+A
Sbjct: 37  ASVVIVHGAFADGSDWAKVIPLLQAKGVKVTAVQNPLT----------SLADDVAAARRA 86

Query: 62  IVSIGKRVTLVGHSLGGIAVAAAAEKNAQDVARIIYLGGYVPSDGESIDSLSDVVLDKEA 121
           I +   +V LVGHS GG  +  A   N   VA ++Y+  + P  G++   L   +     
Sbjct: 87  IDNQPGKVVLVGHSWGGTVITEAG--NHDKVASLVYVAAFAPDAGQATGDLGKDLPVPPG 144

Query: 122 VILGMQDDHQIVDTQADKRVARFMHDTPHAIAAWAAPQFRAQAVAPILSPV---QLTEER 178
           +     D             A F  D P   AA       A    PI       ++    
Sbjct: 145 IAKLSVDKAGFASLPPAALAADFAQDVPAKQAA-----VMAATQGPIAMKAFGDKVETAA 199

Query: 179 YGKLPKSYVVCTRDRVLDPVLQRVMAARAGCSRVKEIDSGHSPFLSRPTETAETLHRLV 237
           +   P  Y+V T+DR++ P L+R  A +    +  E+ + H P  SRP + A+ +   V
Sbjct: 200 WKTRPSWYIVSTKDRMIQPALERAFAKQINA-KTTELPASHVPQQSRPADVAKVILEAV 257


>gi|300313766|ref|YP_003777858.1| alpha/beta hydrolase superfamily
           protein [Herbaspirillum seropedicae SmR1]
          Length = 251

 Score = 57.8 bits (138), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 100/234 (42%), Gaps = 22/234 (9%)

Query: 3   NFLLVHGAWQGKWIWPAVSAELTMRGHEVHAIDMPGSGEDTTPFGEVTLERYADAIRKAI 62
           + +LVHGA+     W  V A L  +G+ V A+  P S          +L     A R+ I
Sbjct: 23  DIVLVHGAFADGSSWSQVIALLQQKGYRVTAVQNPLS----------SLADDVSATRRVI 72

Query: 63  VSIGKRVTLVGHSLGGIAVAAAAEKNAQDVARIIYLGGYVPSDGESIDSLSDVVLDKEAV 122
                 V LVGHS GG  + AA   NA  V  ++YL    P  G+S+   + ++    A 
Sbjct: 73  DRQPHEVLLVGHSWGGAVITAAG--NASKVRGLVYLSALAPDSGQSV---AQMLQRLHAP 127

Query: 123 ILGMQDDHQ-IVDTQADKRVARFMHD--TPHAIAAWAAPQFRAQAVAPILSPVQLTEERY 179
           + GMQ D   ++        A+ M    +P  +   AA Q   Q +A       L    +
Sbjct: 128 MSGMQPDADGLIWLDDAAAYAQVMAGDVSPEQVRHLAAVQ---QPIAAAAFGEPLVHAAW 184

Query: 180 GKLPKSYVVCTRDRVLDPVLQRVMAARAGCSRVKEIDSGHSPFLSRPTETAETL 233
              P  Y++   D+ L   +QR +A   G +R +++ S H   +S P   A+ +
Sbjct: 185 RDKPSWYLITEGDQALPTAVQRKLATLLG-ARTRQLISSHMSLVSHPQVVADFI 237


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 712,135
Number of extensions: 27581
Number of successful extensions: 129
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 3
Length of query: 240
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 157
Effective length of database: 1,226,865
Effective search space: 192617805
Effective search space used: 192617805
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)