BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0088.p
         (343 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310199|ref|YP_003774291.1| hypotehtical protein [Herbaspir...   669   0.0  

>gi|300310199|ref|YP_003774291.1| hypotehtical protein
           [Herbaspirillum seropedicae SmR1]
          Length = 402

 Score =  669 bits (1726), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/343 (94%), Positives = 331/343 (96%)

Query: 1   VGAGPQHYLSQNPHFCRSALSRYTPQDFIGLVKRHRIGFHEKHKGQLFCDDSAEDIIAML 60
           VGAGPQHYLSQNPHFCRSALSRYTPQDFIGLVKRHRIGFHEKHKGQLFCDDSAEDIIAML
Sbjct: 60  VGAGPQHYLSQNPHFCRSALSRYTPQDFIGLVKRHRIGFHEKHKGQLFCDDSAEDIIAML 119

Query: 61  KAECEAGNVSWRMPCTVQEVGKSGEQFRIATSAGEIQASSLVIATGGLSIPKIGATDFAY 120
           KAEC+AGNVSWRMPCTVQEVGKS E FRIATSAGEIQA+SLVIATGGLSIPKIGATDFAY
Sbjct: 120 KAECDAGNVSWRMPCTVQEVGKSSEHFRIATSAGEIQAASLVIATGGLSIPKIGATDFAY 179

Query: 121 RIARQFDLKLVETRPGLVPLTFDGKAWQSLTELAGIALEVSVETGEKKERGHFLEDLLFT 180
           RIARQFDLKLVETRPGLVPLTFDGKAWQSLTELAGIALEV VETG KKERGHFLEDLLFT
Sbjct: 180 RIARQFDLKLVETRPGLVPLTFDGKAWQSLTELAGIALEVEVETGAKKERGHFLEDLLFT 239

Query: 181 HRGLSGPAILQISSFWRPGTPLRLNLLPELDVAQLLIHGKGTLKKNLGNLLAQWLPNRLA 240
           HRGLSGPAILQISS+W+PGTPL LNLLP+LDVA+ LI GKGT+KKNLGN+LAQWLPNRLA
Sbjct: 240 HRGLSGPAILQISSYWKPGTPLTLNLLPQLDVAETLIDGKGTIKKNLGNILAQWLPNRLA 299

Query: 241 EGWLKINGFDANARIADMPDKSLKKLGDSLNHWVILPSGSEGYRKAEVTLGGVDTRELSQ 300
           EGWLKINGFDA  RIADMPDKSLKKLGDSLN WVILPSGSEGYRKAEVTLGGVDTRELSQ
Sbjct: 300 EGWLKINGFDAGGRIADMPDKSLKKLGDSLNRWVILPSGSEGYRKAEVTLGGVDTRELSQ 359

Query: 301 QTMMANKVPGLHFIGEATDVTGWLGGYNFQWAWASGVAAGSAV 343
           QTMMANKVPGLH IGEA DVTGWLGGYNFQWAWASGVAAGSAV
Sbjct: 360 QTMMANKVPGLHVIGEAMDVTGWLGGYNFQWAWASGVAAGSAV 402


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,078,436
Number of extensions: 42718
Number of successful extensions: 143
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 257
Effective length of database: 1,212,660
Effective search space: 311653620
Effective search space used: 311653620
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)