BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0083.p
         (682 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310196|ref|YP_003774288.1| ATP-dependent DNA helicase [Her...   973   0.0  
gi|300309775|ref|YP_003773867.1| ATP-dependent DNA helicase [Her...    69   1e-12

>gi|300310196|ref|YP_003774288.1| ATP-dependent DNA helicase
           [Herbaspirillum seropedicae SmR1]
          Length = 1158

 Score =  973 bits (2515), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 516/587 (87%), Positives = 546/587 (93%), Gaps = 5/587 (0%)

Query: 1   VSAADKQPAAYEVNGEAVEAAVFTRAACDPRHSVVVEACAGSGKTWLLVARMLRLLLAGA 60
           +SAA++ PAAYEVNGEAV+AAVFTRAACDPRHSVVVEACAGSGKTWLLVARMLRLLLAGA
Sbjct: 1   MSAAERAPAAYEVNGEAVDAAVFTRAACDPRHSVVVEACAGSGKTWLLVARMLRLLLAGA 60

Query: 61  QAPELLAITFTRKAAQEMRERLLELLHELALADDAQAATLLRERGVAEPDLPRLLPVARG 120
           QAPELLAITFTRKAAQEMRERLLELLHELALAD+A AA LLRERGVAEPDLPRLLP+ARG
Sbjct: 61  QAPELLAITFTRKAAQEMRERLLELLHELALADEAGAAALLRERGVAEPDLPRLLPLARG 120

Query: 121 LYERILSSEQSLSIDTFHSWFARLLQIAPLASGVPHGYTLTEKNGELIDEAYRRFMQKLR 180
           LYERILSSEQSLSIDTFHSWFARLLQIAPLASGVP+GYTLTEKNGEL+DEAYRRFMQ LR
Sbjct: 121 LYERILSSEQSLSIDTFHSWFARLLQIAPLASGVPYGYTLTEKNGELLDEAYRRFMQTLR 180

Query: 181 EPEGAHVKAALLELYELAGDFNARQLLDAFIDKRAEWWAATQDDDGEEGEETADMPS--P 238
           EPEGAH+KAALLELYELAGDFNARQLLDAFIDKRAEWWAATQDD+ E  E   +  +  P
Sbjct: 181 EPEGAHIKAALLELYELAGDFNARQLLDAFIDKRAEWWAATQDDEQEGEEGAEEHAAPAP 240

Query: 239 LRWLEDLCGPDAQRDARLSLWDDAALLARASQIAILLGQGGSANKTRAVAIESALTAGST 298
           LRWL+ LCG DAQRDARLSLW++ AL+ARASQ+AILLGQGGSAN+ RAVAIESAL+AG  
Sbjct: 241 LRWLQALCGADAQRDARLSLWEEHALVARASQLAILLGQGGSANQARAVAIESALSAGPA 300

Query: 299 LENFDALYSQFFDDKDKPRKNGKVKSLLAALVQHFGSSEEAALTAFEEEFNAIGNALRKL 358
           LE+FDALYSQFFDDKDKPRKNGKVKSLLAALVQHF +SE+AAL AFE EFNA+G ALRKL
Sbjct: 301 LEHFDALYSQFFDDKDKPRKNGKVKSLLAALVQHFEASEDAALVAFEMEFNAVGEALRKL 360

Query: 359 QGRSKEKAVLQLNRALFTAGRTYLACYQEVKSEQRVLDFADLEWQAYRLLRNEASAAYLQ 418
           QGRSKEK VLQLN ALFTAGR YLACYQEVK+EQRVLDFADLEWQAYRLLRNEASAAYLQ
Sbjct: 361 QGRSKEKDVLQLNAALFTAGRAYLACYQEVKAEQRVLDFADLEWQAYRLLRNEASAAYLQ 420

Query: 419 TRLDARYKHILLDEFQDTNPLQWCIVRCWLDAYGGDAAQPSVFVVGDPKQSIYRFRRAEP 478
           TRLDARYKHILLDEFQDTNPLQWCIVRCWLDAYGGDAAQPSVFVVGDPKQSIYRFRRAEP
Sbjct: 421 TRLDARYKHILLDEFQDTNPLQWCIVRCWLDAYGGDAAQPSVFVVGDPKQSIYRFRRAEP 480

Query: 479 RVFVAAREMLRAQGAAILRANQTRRNASAVVDVLNRSFVMGGNPLFAQQTTLGLAGGEVW 538
           RVFVAAREMLRAQGAAILRANQTRRNA+AVVDVLNRSFVMGGNPLFAQQTTLGLAGGEVW
Sbjct: 481 RVFVAAREMLRAQGAAILRANQTRRNATAVVDVLNRSFVMGGNPLFAQQTTLGLAGGEVW 540

Query: 539 RLPLARQDEDAENVISPETPEEPASPESTNNADDIIPWRNPLTTPRG 585
           RLPLAR D+ AENV S +T    A+PE      ++IPWRNPLTTPRG
Sbjct: 541 RLPLARPDDGAENVSSADTDAASAAPEGEP---EVIPWRNPLTTPRG 584


>gi|300309775|ref|YP_003773867.1| ATP-dependent DNA helicase
           [Herbaspirillum seropedicae SmR1]
          Length = 759

 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 66/131 (50%), Gaps = 13/131 (9%)

Query: 384 CYQEVKSEQRVLDFADLEWQAYRLL-RNEASAAYLQTRLDARYKHILLDEFQDTNPLQWC 442
            Y +    + V+DFA+L  + Y LL RN+     L+    +R++HIL+DEFQDTN LQ+ 
Sbjct: 173 LYDQQCQREGVVDFAELLLRTYELLSRNQP----LREHYQSRFRHILVDEFQDTNDLQY- 227

Query: 443 IVRCWLDAYGGDAAQPSVFVVGDPKQSIYRFRRAEPRVFVAAREMLRAQGAAILRANQTR 502
               WL    G     +VF VGD  QSIY FR A      A  +    Q   +++  Q  
Sbjct: 228 ---KWLKLMAGQ--HNAVFAVGDDDQSIYAFRGANVGNMQAFEQEFHVQN--LIKLEQNY 280

Query: 503 RNASAVVDVLN 513
           R+   ++D  N
Sbjct: 281 RSHGHILDTAN 291


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.133    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,829,511
Number of extensions: 68428
Number of successful extensions: 224
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 224
Number of HSP's successfully gapped: 2
Length of query: 682
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 590
Effective length of database: 1,184,250
Effective search space: 698707500
Effective search space used: 698707500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 134 (56.2 bits)